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snippy+gubbins

Open Jessie940409 opened this issue 2 years ago • 0 comments

Hi there, When I ran snippy-core. Snippy includes reference in the alignment file, but I don't want the reference showed in the final tree. Can I just remove the ref genome in core.full.aln before running gubbins or is there any better way?

Best wishes, Jessie

Jessie940409 avatar Nov 25 '21 08:11 Jessie940409