Stuck at solving environment

[maguileraf]

Hi, I am trying to install snippy through conda but it just gets stuck at solving environment. I wonder if there are any suggestions to get it installed.

[apetkau]

You might try making use of mamba https://mamba.readthedocs.io/en/latest/user_guide/mamba.html instead of conda, which can be faster at resolving environments. That is conda install mamba and mamba install snippy.

[maguileraf]

It installs v4.0.2 and it gives me this error: Need samtools --version >= 1.7 but you have 1.12 - please upgrade it.

[druvus]

I would recommend to work in clean environments. Please try to use create instead of install. mamba create -n snippy snippy

[maguileraf]

This worked, thanks!

[valery-shap]

Hello, I have the same stucking with conda install-c conda-forge -c bioconda -c defaults snippy. when I tried : conda create -n snippy -c conda-forge -c bioconda -c defaults snippy

Collecting package metadata (current_repodata.json): done
Solving environment: failed with repodata from current_repodata.json, will retry with next repodata source.
Collecting package metadata (repodata.json): done
Solving environment: - Killed

Upd the recipe with mamba and mamba create -n snippy snippy worked.