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Bad ID when running snippy-multi
Hi, I successfully ran snippy and now want to do some core phylogeny for my SNPs. I created the input.tab file using fastq files and fasta files(some of my samples did not have fastq files for whole genomes). When I run snippy-multi input.tab --ref k12.gbk --cpus 8 > runme.sh I get an error message "Bad ID" I tried exploring the help option but I could not pinpoint and resolve the problem. I will really appreciate any help given.
Below are some random samples from my input.tab file
NT12158 /storage/2021_ecoli_rnaseq/fastq/fastq/NT12158_1.fq.gz /storage/2021_ecoli_rnaseq/fastq/fastq/NT12158_2.fq.gz
NT12879 /storage/2021_ecoli_rnaseq/fastq/fasta/NT12879_649.fasta