samtools version1.11

[Xiaojun928]

Hi,

When I tested snippy, it showed this warning and exited,

Need samtools --version >= 1.7 but you have 1.11 - please upgrade it

But the latest version of samtools is v1.11, which was installed by conda. Should I only use samtools v1.7 to v1.9?

Best regards, Xiaojun

[Jtrachsel]

I had a similar issue when I installed snippy into a mixed conda environment. When I created a new conda environment and installed only snippy into it the problem went away.

[Xiaojun928]

Thanks for your reply! I solved this problem by commenting out this line parse_version( 'samtools --version', 1.7, qr/samtools\s(\d+\.\d+)/ms )