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Snippy install "Can't locate Bio/SeqIO.pm in @INC on version 4.6 conda install

Open Rob-murphys opened this issue 4 years ago • 3 comments

I know this has been a issue previously but it has poped up again on the conda install of version 4.6. Is there a stable version that curently works through conda install?

Rob-murphys avatar Apr 21 '20 09:04 Rob-murphys

I occasionally get this issue but it is usually the conda environment itself. I usually find the easiest way to solve it is with a new conda environment. You can also remove bioperl from the conda environment and snippy and then reinstall.

jrober84 avatar Jul 16 '20 21:07 jrober84

I have the same problem in Ubuntu 20.04.1 LTS, using either Conda or Brew installations. I could install Snippy on my MacBook with BigSur, but it is much slower...

mredrejo avatar Apr 15 '21 19:04 mredrejo

How to solve the following problem, please! Can't locate Bio/SeqIO.pm in @INC (you may need to install the Bio::SeqIO module) (@INC contains: /home/qiime2/miniconda3/bin/../perl5 /home/qiime2/miniconda3/lib/site_perl/5.26.2/x86_64-linux-thread-multi /home/qiime2/miniconda3/lib/site_perl/5.26.2 /home/qiime2/miniconda3/lib/5.26.2/x86_64-linux-thread-multi /home/qiime2/miniconda3/lib/5.26.2 .) at /home/qiime2/miniconda3/bin/snippy line 15. BEGIN failed--compilation aborted at /home/qiime2/miniconda3/bin/snippy line 15. Thanks

BjoerlingTaul avatar Aug 15 '21 13:08 BjoerlingTaul