script to aggregate >1 snippy snp.tab files for easy comparison

[nickloman]

Hi Torst

This is a little script that can be used to aggregate more than 1 snps.tab files from multiple Snippy runs (assuming same reference) into a single tab file to find common/distinct mutations. I find it useful for analysing the results of in vitro evolution experiments.

It's in Python. Sorry in advance but if you could make use of it please do!

Best Nick

[darwinbandoy]

I also combine the individual Snippy output into one file using scripts for machine learning parsing. Format for combined Snippy output can be a possible input for Scoary or other GWAS like analysis. I usually just pivot the tables