Plasmid Annotations

[Javaria-Ashraf]

Dear tseemann,

I want to only annotate plasmid sequences from an assembly file (contig.fa). Can you please guide how can i do this?

Thanks

J.A

[valery-shap]

Hello, I don't know how to do it using Prokka, but advice you: 1.extract plasmid contig by seqkit tool Seqkit grep your.fasta name_of_plasmid_contig > only_plasmid_contig.fasta 2.annotate with Prokka