prokka signalp

[Gao-Lei-Xinjiang]

fangbz 23:20:10 /ldata/fangbz/software/signalp-4.1 $ which prokka /mdata/fangbz/anaconda2/bin/prokka fangbz 23:26:43 /ldata/fangbz/software/signalp-4.1 $ which signalp alias signalp='/ldata/fangbz/software/signalp-4.1/signalp' /ldata/fangbz/software/signalp-4.1/signalp fangbz 23:26:56 /ldata/fangbz/software/signalp-4.1 $

fangbz 23:27:35 /ldata/fangbz/software/signalp-4.1 $ prokka /ldata/fangbz/gl/BK124/single/bins.1.fa --outdir /ldata/fangbz/gl/BK124/single/prokka --prefix BK124 --metagenome --kingdom Bacteria --force [23:27:50] This is prokka 1.12 [23:27:50] Written by Torsten Seemann [email protected] [23:27:50] Homepage is https://github.com/tseemann/prokka [23:27:50] Local time is Thu Dec 9 23:27:50 2021 [23:27:50] You are fangbz [23:27:50] Operating system is linux [23:27:50] You have BioPerl 1.7.8 Argument "1.7.8" isn't numeric in numeric lt (<) at /mdata/fangbz/anaconda2/bin/prokka line 252. [23:27:50] System has 160 cores. [23:27:50] Will use maximum of 8 cores. [23:27:50] Annotating as >>> Bacteria <<< [23:27:50] Generating locus_tag from '/ldata/fangbz/gl/BK124/single/bins.1.fa' contents. [23:27:50] Setting --locustag BKBDAGLN from MD5 b4bda057184a2e899499c16da10cab55 [23:27:50] Re-using existing --outdir /ldata/fangbz/gl/BK124/single/prokka [23:27:50] Using filename prefix: BK124.XXX [23:27:50] Setting HMMER_NCPU=1 [23:27:50] Writing log to: /ldata/fangbz/gl/BK124/single/prokka/BK124.log [23:27:50] Command: /mdata/fangbz/anaconda2/bin/prokka /ldata/fangbz/gl/BK124/single/bins.1.fa --outdir /ldata/fangbz/gl/BK124/single/prokka --prefix BK124 --metagenome --kingdom Bacteria --force [23:27:50] Appending to PATH: /mdata/fangbz/anaconda2/bin [23:27:50] Looking for 'aragorn' - found /mdata/fangbz/anaconda2/bin/aragorn [23:27:50] Determined aragorn version is 1.2 [23:27:50] Looking for 'barrnap' - found /mdata/fangbz/anaconda2/bin/barrnap [23:27:50] Determined barrnap version is 0.9 [23:27:50] Looking for 'blastp' - found /mdata/fangbz/anaconda2/bin/blastp [23:27:50] Determined blastp version is 2.5 [23:27:50] Looking for 'cmpress' - found /mdata/fangbz/anaconda2/bin/cmpress [23:27:50] Determined cmpress version is 1.1 [23:27:50] Looking for 'cmscan' - found /mdata/fangbz/anaconda2/bin/cmscan [23:27:50] Determined cmscan version is 1.1 [23:27:50] Looking for 'egrep' - found /bin/egrep [23:27:50] Looking for 'find' - found /bin/find [23:27:50] Looking for 'grep' - found /bin/grep [23:27:50] Looking for 'hmmpress' - found /mdata/fangbz/anaconda2/bin/hmmpress [23:27:50] Determined hmmpress version is 3.1 [23:27:50] Looking for 'hmmscan' - found /mdata/fangbz/anaconda2/bin/hmmscan [23:27:50] Determined hmmscan version is 3.1 [23:27:50] Looking for 'java' - found /bin/java [23:27:50] Looking for 'less' - found /bin/less [23:27:50] Looking for 'makeblastdb' - found /mdata/fangbz/anaconda2/bin/makeblastdb [23:27:50] Determined makeblastdb version is 2.5 [23:27:50] Looking for 'minced' - found /mdata/fangbz/anaconda2/bin/minced [23:27:51] Determined minced version is 4.2 [23:27:51] Looking for 'parallel' - found /bin/parallel [23:27:51] Determined parallel version is 20160222 [23:27:51] Looking for 'prodigal' - found /mdata/fangbz/anaconda2/bin/prodigal [23:27:51] Determined prodigal version is 2.6 [23:27:51] Looking for 'prokka-genbank_to_fasta_db' - found /mdata/fangbz/anaconda2/bin/prokka-genbank_to_fasta_db [23:27:51] Looking for 'rnammer' - found /usr/local/bin/rnammer [23:27:51] Determined rnammer version is 1.2 [23:27:51] Looking for 'sed' - found /bin/sed [23:27:51] Looking for 'signalp' - found /bin/signalp [23:27:51] Could not determine version of signalp - please install version 3.0 or higher

How can I change "Looking for 'signalp' - found /bin/signalp" ?