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Published 20 hours ago • verified publisher icon tseemann

MLST database not indicated

Open deearahman opened this issue 4 years ago • 1 comments

Hi tseemann,

I'm wondering why is the mlst database blank. I did get the mlst result so I am assuming it was from the mlst/db/... Screenshot from 2019-12-04 16-23-55

Thanks, Dyana

deearahman avatar Dec 04 '19 08:12 deearahman

Hmmm, not sure! The code is:

realpath(dirname(which('mlst'))."/../db/blast/mlst.fa");

In your bash shell can you type

realpath "$(dirname $(which mlst))/../db/blast/mlst.fa"

tseemann avatar Dec 04 '19 08:12 tseemann