Create a GFF of MLST loci

Open lskatz opened this issue 9 years ago • 2 comments

I added an option --gff to create a GFF file describing where each locus is in the query genome. Optimally, I would like a gbk file, but I chose to go with gff so that it doesn't add a BioPerl requirement. However, I did add some use statements for some core modules.

Dec 15 '16 15:12 lskatz

@lskatz it seems i missed this for 9 years :-(

I am confused about what it is doing. What was the GFF file for? ie. what was the reference genome(s) ?

Dec 08 '25 21:12 tseemann

Oh wow I forgot about this!

It would provide coordinates of where each locus is found in the query genome.

Dec 08 '25 22:12 lskatz