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Published 20 hours ago • verified publisher icon tseemann

Bug getfasta with --outseq

Open johanzi opened this issue 4 months ago • 0 comments

I got this bug when using the --outseq :

[barrnap] Running: bedtools getfasta -s -name+ -fo 'out.fa' -fi '/tmp/DCK1ZXW9lo' -bed '/tmp/C6qa9HAUtf'
*****ERROR: Unrecognized parameter: -name+ *****

The problem seems to be line 171 of /bin/barrnap. I changed -name+ by -name and the flag --outseq is now working and generating a fasta file.

johanzi avatar Feb 09 '24 15:02 johanzi