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Published 20 hours ago • verified publisher icon tseemann

Error: Invalid alphabet type in target for nhmmer.

Open theo-allnutt-bioinformatics opened this issue 1 year ago • 0 comments

My fasta file is definitely valid, but get this error.

Command: nhmmer --cpu 12 -E 1e-06 --w_length 3878 -o /dev/null --tblout /dev/stdout '/g/data/nm31/bin/barrnap/bin/../db/euk.hmm' 'nothofagus_assembly.fasta' [barrnap] ERROR: nhmmer failed to run - Error: Invalid alphabet type in target for nhmmer. Expect DNA or RNA.

theo-allnutt-bioinformatics avatar Jun 28 '23 05:06 theo-allnutt-bioinformatics