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Published 20 hours ago • verified publisher icon tseemann

Found 0 plasmid related genes in my hundreds of strains

Open qianxin-kxy opened this issue 1 year ago • 1 comments

Hello, I have a headache question. Why is there not a plasmid in the genome of over 900 strains of Acinetobacter baumannii? The software version I am using is abricate 1.0.1

Here is the code abricate --threads 100 --db plasmidfinder /data/users/kxytry/assembleddata/tog/infile/*.fasta --minid 40 --mincov 40 > plasmidfinder.tab

Here are one of the prompts Processing: /data/users/kxytry/assembleddata/tog/infile/6779.fasta Found 0 genes in /data/users/kxytry/assembleddata/tog/infile/6779.fasta Tip: remember that abricate is unable to find AMR-mediated SNPs. Done.

qianxin-kxy avatar Jun 01 '23 03:06 qianxin-kxy

same issue

maricleon avatar Sep 18 '23 06:09 maricleon