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Samples missing in output when no hits are found
If no hits are found for a sequence, that sequence doesn't appear in the summary matrix as no results are found in the previous results file. For that reason, no information for that sequence is showed in the matrix. Samples with NUM_FOUND = 0 should appear there, too. If not, users have to check what samples are missing. Imagine if users have hundreds of them.
I have the same suggestion. could you find a solution?