Trevor Bedford

Results 48 comments of Trevor Bedford

I think this is worth attending to at some point. There are a bunch of SARS-CoV-2 analyses that now want to work with just a more recent clade rather than...

@sarahCobey do we really need this? I would think explosive diversity would be a proper model output under some regimes.

@sarahCobey @OanaCarja I'd like to implement this, but need a good definition of explosive. Do we just look at genealogical diversity? Do we need to consider antigenic diversity as well?...

Attack rate? Time profiling? Memory profiling?

We've been running into this as well. Would be awesome to have this implemented. 👍

Interesting. I think most of this is with SVG performance rather than Mb of data in the JSON (but I bet we could save some space by reducing significant digits,...

Very cool idea! Quick thoughts: Claus Wilke has argued that the most intuitive way to represent uncertainty for most audiences is exactly what you're doing here. Animate across realizations. https://docs.google.com/presentation/d/1zMuBSADaxdFnosOPWJNA10DaxGEheW6gDxqEPYAuado/edit#slide=id.p40...

Thanks everyone for thinking through this. I like the UUID node name strategy. Very clever. I agree with the strategy outlined by James in the May 3 post: https://github.com/nextstrain/auspice/issues/1036#issuecomment-623263664 as...