trishorts

you are correct. for now you have to simply ignore anything in the output with a q-value greater than your desired tolerance. I will create an issue and try to...

It should be robust to that but I will have to double check. Is there any way that you could share the psm file and at least one raw file...

FlashLFQ can handle some instances of multiple .s but your presents a funny case. In the peptide shaker output it thinks the .3 is the file extension. The easiest solution...

[Default.PSM.Report_raw.txt](https://github.com/smith-chem-wisc/FlashLFQ/files/11557101/Default.PSM.Report_raw.txt)

Thanks Veit. We are on it.

https://github.com/smith-chem-wisc/mzLib/pull/747

I think it goes a bit higher. Nonetheless it is not meant to prevent overflow. When overflow happens a negative number is returned. This check will substitute ulong max for...

fixed in the next relase

check boxes added in next release

fixed