austraits

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reduced package dependencies for API launch

3

Some of the packages required for the 5.0.0 release are not available in the current pre-made image used to launch the API. I would like a branch of the the...

dcol2804

load_austraits broken

4

``` at42 res

fontikar

`as_wide_table` cannot find columns that do not exist

1

Currently `as_wide_table` will throw an error if any of the columns [here](https://github.com/traitecoevo/austraits/blob/c337e12b78ba3e7f0dccf8d5533d66ee646b534f/R/as_wide_table.R#L76) do not exist. I think `any_of(c(...))` should be added within the `select()` function so that any missing columns...

yangsophieee

 Currently on [Line 235](https://github.com/traitecoevo/austraits/blob/c337e12b78ba3e7f0dccf8d5533d66ee646b534f/R/join_all.R#L235), `separate_rows` splits `link_vals` into separate rows leading to non-uniquely identified `link_vals` which leads to `pivot_wider(names_from = link_id, values_from = link_vals)` outputting a list column and...

yangsophieee

**Context** The `extract` and `join` functions act on the entire database, while any additional filtering of columns that a user might wish to perform need to be done on just...

ehwenk

Get versions not loading correctly

3

```get_versions("ignore/data/") # A tibble: 7 × 3 date version doi 1 2023-09-18 4.2.0 10.5281/zenodo.8353840 2 2023-01-30 4.1.0 10.5281/zenodo.7583087 3 2022-11-27 4.0.0 10.5281/zenodo.7368074 4 2021-07-14 3.0.1 10.5281/zenodo.5099552 5 2021-07-14 3.0.0 10.5281/zenodo.5099545...

fontikar

join_contexts failing on `vanderMoezel_1987` in v 4.2.0

1

the `join_contexts` function is failing at `vanderMoezel_1987` (v4.2.0), because there are two entries for a context that map to the same context property value - and therefore break the function...

ehwenk

as_wide_table function with austraits v 4.2.0

13

**Describe the bug** The as_wide_table function is breaking with the new version 4.2.0. **To Reproduce** Steps to reproduce the behavior: 1. Run these lines of code: remotes::install_github("traitecoevo/austraits") library(austraits) austraits

dcol2804

Right now, the columns used to link relational tables together remain after tables are joined together. They are no longer needed and should probably be removed to reduce the number...

ehwenk

Recently I've been integrating various vignettes from austraits.build and traits.build into a manual, available at . The The AusTraits Plant Dictionary (APD) is now also available at http://w3id.org/APD/ As a...

dfalster