propr

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Error: posthoc reports finding negative measurements where there is none

7

Heya, Thom I've been using your package for a while and recently tried the newly implemented posthoc function, but it threw me an error: Error in if (any(counts < 0))...

tormolle

## propr 5.0.5 --------------------- * Allowed `updateCutoffs` function to compute FDR on negative values, when asked * Changed `runCutoff` into `getCutoffFstat` * Added `getCutoffFDR` to get a significant cutoff based...

suzannejin

New vignettes

2

It would be very grate if you could make newer vignettes.

SilasK

suzannejin

Difficulty running updateCutoffs() on tutorial (simulated) data

3

Hello, Thank you very much for creating and maintaining this resource! I really appreciate the work to help standardize the use of these tools in biological data types. I just...

kmuench

Vertical integration of datasets

3

Thanks for a great package and very useful publications! I'm working with a time-series of samples for which metagenomic (`mg`) and metatranscriptomic (`mt`) data has been generated using Illumina sequencing....

johnne

issue with installing the package

3

Hello, I noticed this package has been updated only on GitHub and not on CRAN. However, my attempt to install it following up the suggested commands yields the following error...

drjingma

This pull request addresses an issue in the handling of the select argument when reducing data size before computing the matrix. The original code assumed select was always a singular...

audrey-bollas

Problem using select?

2

Hello, thanks for the great tool. I am using it on a set of RNA-Seq data with ~55k genes (features). I would like to use the select argument to dynamically...

audrey-bollas

Issue in tests

1

``` ══ Failed ═══════════════════════════════════════════════════════════════════════════════════════════════════════════════════════════════════════════════════════════════════════════════════════ ── 1. Failure (test-PROPD-theta.R:72:3): active theta_e matches calculation using theta_d ─────────────────────────────────────────────────────────────────────────────────────────────────────── setActive(pd_w, what = "theta_e")@results$theta (`actual`) not equal to 1 - pd_w@results$theta + ... (`expected`). `actual`:...

zalbanob