snakemake-workflow topic
tibanna
Tibanna helps you run your genomic pipelines on Amazon cloud (AWS). It is used by the 4DN DCIC (4D Nucleome Data Coordination and Integration Center) to process data. Tibanna supports CWL/WDL (w/ doc...
snakemake-econ-r
reproducible research project template for R using Renv and snakemake with an econ application
benchpress
A Snakemake workflow to run and benchmark structure learning (a.k.a. causal discovery) algorithms for probabilistic graphical models.
rna-seq-pop
Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data
amoebae
Workflow for identifying and classifying homologous gene/protein sequences
grenepipe
A flexible, scalable, and reproducible pipeline to automate variant calling from raw sequence reads, with lots of bells and whistles.
pypsa-fes
A model that optimises investment and operation, and incorporates flexibility domestic demand flexibility to model scenarios for Great Britain's future energy system.
s-shemmee
Config files for my GitHub profile.
eems-around-the-world
Repo to analyze population genetic data with many different methods