molecule-generation topic

List molecule-generation repositories

CORE

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CORE: Automatic Molecule Optimization using Copy & Refine Strategy (AAAI 2020)

GDSS

132
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22
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Official Code Repository for the paper "Score-based Generative Modeling of Graphs via the System of Stochastic Differential Equations" (ICML 2022)

GeoLDM

167
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32
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Geometric Latent Diffusion Models for 3D Molecule Generation

DrugAssist

122
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10
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DrugAssist: A Large Language Model for Molecule Optimization

MolDiff

31
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9
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MolDiff: Addressing the Atom-Bond Inconsistency Problem in 3D Molecule Diffusion Generation

biochemical-lms-for-drug-design

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Code for the paper "Exploiting Pretrained Biochemical Language Models for Targeted Drug Design", to appear in Bioinformatics, Proceedings of ECCB2022.

posebusters

179
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12
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Plausibility checks for generated molecule poses.

rlmolecule

27
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9
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A reinforcement learning library for material and molecule optimization

MGVAE

16
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2
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Multiresolution Equivariant Graph Variational Autoencoder (MGVAE) https://arxiv.org/abs/2106.00967

data_centric_transfer

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[NeurIPS'23] Source code of "Data-Centric Learning from Unlabeled Graphs with Diffusion Model": A data-centric transfer learning framework with diffusion model on graphs.