gene.iobio
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tonydisera
An iobio app for examining gene variants
1. Remove the use cases page and replace tutorial links to relevant blog posts. 2. Update demo data set in 'About' to new exomized platinum data. 3. Update links in...
 It looks like VEP 90 is only showing gnomAD allele frequencies for exomes.   IMPORTANT: VEP 90 isn’t matching 1000G Allele frequencies in all cases:  ubuntu@nv-dev-new:~/minion/bin$ tabix...
Currently the iobio webservices are called directly in the function. e.g. ``` var cmd = new iobio.cmd( IOBIO.tabix, ['-H', vcfURL], {ssl: useSSL} ); cmd.on('data', function(data) { if (data != undefined)...
When Al was working on one of the UDP cases, he copy/pasted the term into the Phenolyzer dropdown. No results were returned.
Show clinvar counts. Now zoom into region. Now show clinvar variants. Notice that the gene model doesn't zoom.
I'm running through the demo data set and seeing a SNP with a non-canonical representation. vt normalize should not output this variant, so are we sure it's running? Also, if...
I've added population allele frequencies for 1000G to the tooltip.  Now we need to decided if we want to remove the AF...
This is a confusing concept and should be removed as a standard filter. Available in an advanced panel.
For example, someone may want to have the coverage as a row in the table for the purposes of prioritizing the variants. We should probably have a generic glyph for...