Tom White
Tom White
On 30 May 2020 I sent the following message to the NI Department of Health: > Thank you for making the COVID-19 dashboard available. > > Are there plans to...
The new PHW dashboard at https://public.tableau.com/profile/public.health.wales.health.protection#!/vizhome/RapidCOVID-19virology-Public/Headlinesummary breaks down case numbers by local authority again. To summarize: * Before 21 March, cases numbers were by LA. * From 21 March to...
A IEEE 754 NaN is not a single value, but a set of possible values. While it's possible to store different NaN values in Zarr, there are some subtleties, particularly...
Initial draft of a spec for splitting BAM index files, similar to that used in Hadoop-BAM. A htsjdk implementation can be found in https://github.com/samtools/htsjdk/pull/1138.
This is an umbrella issue to track the work needed to run sgkit on [Cubed](https://github.com/tomwhite/cubed). This is possible because Cubed exposes the [Python array API standard](https://data-apis.org/array-api/latest/) as well as [common...
When trying to debug which modules are being transmitted, setting ``` lithops: log_level: DEBUG ``` doesn't show any messages from `ModuleDependencyAnalyzer`. This doesn't seem to work either (in an example...
I have found it very useful to use [Fil](https://pythonspeed.com/fil/docs/index.html) for finding the peak memory use of functions running on Lithops. The way I got it to work was to change...
From https://github.com/brentp/cyvcf2/actions/runs/3144344369 ``` [upload_pypi: # >> PyPA publish to PyPI GHA: UNSUPPORTED GITHUB ACTION VERSION
Including aggregation with nans, astype, where, stack. This is a follow-on to #6804, delegating more functions to `np` or `xp` as appropriate. - [x] Tests added
This would help with the sgkit build: https://github.com/pystatgen/sgkit/pull/1111#issuecomment-1686316377