Tom White

> ... the tests against scikit-allel are still failing. Maybe time to add the scikit-allel test data and drop the dependency? _Originally posted by @timothymillar in https://github.com/sgkit-dev/sgkit/issues/1228#issuecomment-2178140077_ I didn't see...

Another failing case I found was in the VCF writer code. ``` ================================================================================= FAILURES ================================================================================== __________________________________________________________________________ test_ftoa[0.0005-0.001] __________________________________________________________________________ f = np.float32(0.0005), a = '0.001' @pytest.mark.parametrize( "f, a", [ (0.0, "0"),...

I noticed that scikit-allel is now compatible with NumPy 2, which makes this a lot easier! (Thanks @alimanfoo for that!) I have updated #1237.

Thanks for opening this @TomNicholas. I agree with your analysis, and I'd also suggest building it in a separate project, and share the parts needed (storage, runtime, maybe primitives, etc)....

Hi @lgray, thanks for opening this issue! You can set the backend array API that Cubed uses for array operations in each task by setting `CUBED_BACKEND_ARRAY_API_MODULE`. E.g. ```python CUBED_BACKEND_ARRAY_API_MODULE=awkward pytest...

I think there are a couple of cases here: 1. Computing a given region of a derived dataset. (This is #642) 2. Updating a derived dataset given a changeset for...

@TomNicholas that would make a great example. Who could turn it into a notebook? 😄

BTW I sketched what block tracing from might look like (for #642 - from output to input) here: https://github.com/cubed-dev/cubed/tree/region. (That doesn't cover any of the differential stuff.)

> BTW I sketched what block tracing from might look like (for [#642](https://github.com/cubed-dev/cubed/issues/642) - from output to input) here: https://github.com/cubed-dev/cubed/tree/region. (That doesn't cover any of the differential stuff.) I moved...

@songhan89 thanks for opening an issue and providing the test code and files. I've managed to reproduce the error. It looks like the problem is occurring when Xarray tries to...