Highlighting when pval below threshold

[davidkurland]

Is there are way to call out or highlight a cell when p<0.05?

[tompollard]

@davidkurland Not currently, as far as I'm aware, I'm sorry. We could potentially add it, so I'll keep this issue open.

[tompollard]

@jraffa @davidkurland how about adding a new pval_threshold argument. If the p-value is less than or equal to the threshold, we display a * after the value?

[tompollard]

I have added a draft implementation on the https://github.com/tompollard/tableone/tree/tp/pval_threshold branch, if you'd like to give it a try.

Clone the repo, switch to the pval_threshold branch (git switch pval_threshold), then pip install . within the folder to install.

from tableone import TableOne, load_dataset

data = load_dataset('pn2012')

table1 = TableOne(data, groupby="death", pval=True, pval_threshold=0.2)
print(table1.tabulate(tablefmt = "github"))

		Missing	Overall	0	1	P-Value
n			1000	864	136
Age, mean (SD)		0	65.0 (17.2)	64.0 (17.4)	71.7 (14.0)	<0.001*
SysABP, mean (SD)		291	114.3 (40.2)	115.4 (38.3)	107.6 (49.4)	0.134*
Height, mean (SD)		475	170.1 (22.1)	170.3 (23.2)	168.5 (11.3)	0.304
Weight, mean (SD)		302	82.9 (23.8)	83.0 (23.6)	82.3 (25.4)	0.782
ICU, n (%)	CCU	0	162 (16.2)	137 (15.9)	25 (18.4)	<0.001*
	CSRU		202 (20.2)	194 (22.5)	8 (5.9)
	MICU		380 (38.0)	318 (36.8)	62 (45.6)
	SICU		256 (25.6)	215 (24.9)	41 (30.1)
MechVent, n (%)	0	0	540 (54.0)	468 (54.2)	72 (52.9)	0.862
	1		460 (46.0)	396 (45.8)	64 (47.1)
LOS, mean (SD)		0	14.2 (14.2)	14.0 (13.5)	15.4 (17.7)	0.386

@jraffa @davidkurland Please let me know your thoughts!