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Template for writing a PhD thesis in Markdown

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Hello! Thank you for the package, I'm really excited to start using it. I downloaded MacTex from homebrew casks with ```brew cask install mactex``` and followed the sudo commands in...

Page numbers are not shown (nor counted) on the table of contents.

- All metadata is now in a YAML-file which is used in templates - Cleaned up the LaTeX-template (for my use: uses now suftesi as documentclass, titlepage in template as...

Hi, You said "it isn't possible to add a short caption to tables", however this is now possible with the pandoc-crossref filter. Note that it only works if `codeBlockCaptions` are...

Normally I'd fix them by adding ``` \clubpenalty10000 \widowpenalty10000 \displaywidowpenalty=10000 ``` but this screws with the references. Any other options ? Any idea why this messes with citations ? **Edit:**...

It seems that the \ref{*} command isn't resolving when making HTML or DOCX files. I have \label{*} in all of my figures and I use \ref{*} to reference them in...

Hi, I would like to add references at the end of each chapter. Please let me know how I can do this? with regards, Ram

Hi While make I am getting following error: pandoc "/tmp/phd_thesis_markdown/source"/*.md \ -o "/tmp/phd_thesis_markdown/output/thesis.pdf" \ -H "/tmp/phd_thesis_markdown/style/preamble.tex" \ --template="/tmp/phd_thesis_markdown/style/template.tex" \ --bibliography="/tmp/phd_thesis_markdown/source/references.bib" 2>pandoc.log \ --csl="/tmp/phd_thesis_markdown/style/ref_format.csl" \ --highlight-style pygments \ -V fontsize=12pt \...

From the [wallpaper manual](http://www.cs.rug.nl/michael/wallpapermanual.pdf), I see that there's the possibility to offset the logo by some amount away from the margin (I want the logo of my uni to be...

Sweet idea! I'm wondering if it's possible to inline TikZ and PGFPlots in the markdown?