Tom Doel

hi @mollymolla did you manage to resolve this? There is a class `MimImageCoordinateUtilities` which contains various methods for converting between coordinate systems. For example `MimImageCoordinateUtilities.PTKToDicomCoordinates(ptk_coordinates, template_image)` will convert from PTK...

It's not currently supported in the GUI, but could be done with some coding. It's a little complicated because PTK doesn't directly use the airway segmentation image to compute the...

Hi, Thanks for your feedback! The lobe segmentation can go wrong for several reasons. The fisureness is only used in the final step to refine the "initial lobar approximation" which...

Hi, You need to install a Matlab-compatible C++ compiler. Some of PTK's functions are written as C++ `mex` files and they need to be compiled before use. PTK will normally...

Hi, thanks for posting the issues. The pulmonary segment algorithms are quite experimental and don't always work. They are based heuristically on analysis of the branching airway tree, and error...

Hi, which version are you using? There was an issue which was fixed in v1.0.1 which previoulsy caused this problem on some datasets. 1.0.1 is the latest version on git...

Hi, I would recommend using git to clone the latest codebase `https://github.com/tomdoel/pulmonarytoolkit.git` and regularly updating with `git pull` (see git documentation for details, or use GitHub Desktop to do the...

So far I've not been able to reproduce this on R2015b or R2016b. It sounds like a problem with the Matlab image processing toolbox but it's hard to confirm that....

NB. I'm planning to spin out the GUI system soon as a separate project so it can be used to create custom GUI applications

Hi, Sounds like the class `Framework/PTKMain.m` has been modified in some way (maybe accidentally). The original file in the repository seems to be fine.