alfred

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What are the statistics affected by `alfred qc --bed`?

2

Hi Tobias I haven't dug closely into the source code for this, so apologies if this question is a bit lazy: What are the metrics affects by using the optional...

evanbiederstedt

I have six repli-Seq data (G1,S1,S2,S3,S4,G2). I want to get the repli value like [Repli-chip](https://www.encodeproject.org/experiments/ENCSR290TDG/). 1. I execute alfred replication. I found that the value are all integers in profile.tsv...

fengchuiguo1994

paired-end view

1

I use alfred to extract reads aligned to a particular region from a bam file. My bam file is derived from Illumina paired-end read data. Currently I can extract all...

Tgrandis