ctakes-docker
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tmills
Hi Tim, I was trying to configure following the steps on the tutorial, however UMLS replaced the username and password to SSO, is this tutorial still valid? What should be...
Hi, I followed every step from the readme, however when I opened the xml on cas (cvd) , it triggered the following error. I'm using Linux 18 LTS , on...
Hi All, I've managed to make it through to this point, but I appear to be now unable to load descriptor (remoteNoDeid.xml, since I'm not using deidentification). When I attempt...
Hi @tmills I'm running into an error when running the CVD. This issue seems similar to the one brought up in https://github.com/tmills/ctakes-docker/issues/29, with similar symptoms, but the traceback is different....
When run the command `docker run -v ~/ctakes-docker-clean/log:/log --env-file env_file.txt -it ctakes-as-pipeline` I got error an error message no broker cert file found "Error: No broker_cert file found /deploy.sh: exit:...
There are a bunch of run*Container.sh in bin/ that only differ by the name of the container being started. They should be combined to simplify the directory structure and the...
``` Error on process CAS call to remote service: org.apache.uima.aae.error.UimaEEServiceException: org.apache.uima.aae.error.UimaAsDelegateException: ----> Controller:/Aggregate with de-identification Received Exception on CAS:-78a3f0e6:1629c8b9cb4:-7ff9 From Delegate:remoteI2b2Writer at org.apache.uima.adapter.jms.activemq.JmsOutputChannel.sendReply(JmsOutputChannel.java:946) at org.apache.uima.aae.controller.AggregateAnalysisEngineController_impl.sendReplyWithException(AggregateAnalysisEngineController_impl.java:2076) at org.apache.uima.aae.controller.AggregateAnalysisEngineController_impl.sendReplyToRemoteClient(AggregateAnalysisEngineController_impl.java:2170) at org.apache.uima.aae.controller.AggregateAnalysisEngineController_impl.replyToClient(AggregateAnalysisEngineController_impl.java:2342) at...
If the sentence detector ends up creating a very long sentence, I2b2ReadyFileWriter.getSentenceCoverage just includes the entire "sentence". This is not useful if the "sentence" is 1000s of characters long, and...
Hi Sean, Tim, cTAKES Community, How do I make the cTAKES Collection Reader continuously "listen" for more clinical documents to process? Some notes on how I am trying this: -...
Hi Sean, Tim, cTAKES Community, I have put together what I am considering a pretty standard dictionary with sources from the following: - MEDLINEPLUS - MSH - NCI - NDFRT...