sl3
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Published
20 hours ago •
tlverse
tlverse
installation problem
I can't install sl3 and the problem seems to be the package imputeMIssings is not available on cran or GitHub.
R> install_github("tlverse/sl3@devel")
Downloading GitHub repo tlverse/sl3@devel
Skipping 1 packages not available: imputeMissings
── R CMD build ──────────────────────────────────────────────────────────────────────────────────────────────────────────
✔ checking for file ‘/private/var/folders/vz/g1j5pr8n7tg786zcwmv2dx8c0000gp/T/RtmpfjYW9M/remotesb0051fb03685/tlverse-sl3-fa669c7/DESCRIPTION’ ...
─ preparing ‘sl3’:
✔ checking DESCRIPTION meta-information ...
─ installing the package to process help pages
-----------------------------------
ERROR: dependency ‘imputeMissings’ is not available for package ‘sl3’
─ removing ‘/private/var/folders/vz/g1j5pr8n7tg786zcwmv2dx8c0000gp/T/RtmpsQleDd/Rinst1107e74f92463/sl3’
-----------------------------------
ERROR: package installation failed
Error: Failed to install 'sl3' from GitHub:
! System command 'R' failed
R> session_info()
─ Session info ────────────────────────────────────────────────────────────────────────────────────────────────────────
setting value
version R version 4.3.1 (2023-06-16)
os macOS Ventura 13.4.1
system x86_64, darwin20
ui RStudio
language (EN)
collate en_US.UTF-8
ctype en_US.UTF-8
tz America/Toronto
date 2023-08-18
rstudio 2023.06.0+421 Mountain Hydrangea (desktop)
pandoc 3.1.1 @ /Applications/RStudio.app/Contents/Resources/app/quarto/bin/tools/ (via rmarkdown)
─ Packages ────────────────────────────────────────────────────────────────────────────────────────────────────────────
! package * version date (UTC) lib source
backports 1.4.1 2021-12-13 [1] CRAN (R 4.3.0)
broom * 1.0.5 2023-06-09 [1] CRAN (R 4.3.0)
cachem 1.0.8 2023-05-01 [1] CRAN (R 4.3.0)
callr 3.7.3 2022-11-02 [1] CRAN (R 4.3.0)
cli 3.6.1 2023-03-23 [1] CRAN (R 4.3.0)
colorspace 2.1-0 2023-01-23 [1] CRAN (R 4.3.0)
crayon 1.5.2 2022-09-29 [1] CRAN (R 4.3.0)
curl 5.0.1 2023-06-07 [1] CRAN (R 4.3.0)
desc 1.4.2 2022-09-08 [1] CRAN (R 4.3.0)
devtools * 2.4.5 2022-10-11 [1] CRAN (R 4.3.0)
V digest 0.6.32 2023-07-07 [1] CRAN (R 4.3.0) (on disk 0.6.33)
distill * 1.5 2022-09-07 [1] CRAN (R 4.3.0)
downlit 0.4.2 2022-07-05 [1] CRAN (R 4.3.0)
dplyr * 1.1.2 2023-04-20 [1] CRAN (R 4.3.0)
ellipsis 0.3.2 2021-04-29 [1] CRAN (R 4.3.0)
evaluate 0.21 2023-05-05 [1] CRAN (R 4.3.0)
fansi 1.0.4 2023-01-22 [1] CRAN (R 4.3.0)
farver 2.1.1 2022-07-06 [1] CRAN (R 4.3.0)
fastmap 1.1.1 2023-02-24 [1] CRAN (R 4.3.0)
V fs 1.6.2 2023-07-20 [1] CRAN (R 4.3.0) (on disk 1.6.3)
generics 0.1.3 2022-07-05 [1] CRAN (R 4.3.0)
V ggplot2 * 3.4.2 2023-08-14 [1] CRAN (R 4.3.0) (on disk 3.4.3)
glue 1.6.2 2022-02-24 [1] CRAN (R 4.3.0)
gtable 0.3.3 2023-03-21 [1] CRAN (R 4.3.0)
HistData * 0.9-1 2023-08-09 [1] CRAN (R 4.3.0)
V htmltools 0.5.5 2023-08-10 [1] CRAN (R 4.3.0) (on disk 0.5.6)
htmlwidgets 1.6.2 2023-03-17 [1] CRAN (R 4.3.0)
httpuv 1.6.11 2023-05-11 [1] CRAN (R 4.3.0)
janitor * 2.2.0 2023-02-02 [1] CRAN (R 4.3.0)
knitr 1.43 2023-05-25 [1] CRAN (R 4.3.0)
labeling 0.4.2 2020-10-20 [1] CRAN (R 4.3.0)
later 1.3.1 2023-05-02 [1] CRAN (R 4.3.0)
lifecycle 1.0.3 2022-10-07 [1] CRAN (R 4.3.0)
lubridate 1.9.2 2023-02-10 [1] CRAN (R 4.3.0)
magrittr 2.0.3 2022-03-30 [1] CRAN (R 4.3.0)
memoise 2.0.1 2021-11-26 [1] CRAN (R 4.3.0)
mime 0.12 2021-09-28 [1] CRAN (R 4.3.0)
miniUI 0.1.1.1 2018-05-18 [1] CRAN (R 4.3.0)
munsell 0.5.0 2018-06-12 [1] CRAN (R 4.3.0)
pillar 1.9.0 2023-03-22 [1] CRAN (R 4.3.0)
pkgbuild 1.4.2 2023-06-26 [1] CRAN (R 4.3.0)
pkgconfig 2.0.3 2019-09-22 [1] CRAN (R 4.3.0)
pkgload 1.3.2 2022-11-16 [1] CRAN (R 4.3.0)
prettyunits 1.1.1 2020-01-24 [1] CRAN (R 4.3.0)
processx 3.8.2 2023-06-30 [1] CRAN (R 4.3.0)
profvis 0.3.8 2023-05-02 [1] CRAN (R 4.3.0)
promises 1.2.0.1 2021-02-11 [1] CRAN (R 4.3.0)
ps 1.7.5 2023-04-18 [1] CRAN (R 4.3.0)
V purrr 1.0.1 2023-08-10 [1] CRAN (R 4.3.0) (on disk 1.0.2)
R6 2.5.1 2021-08-19 [1] CRAN (R 4.3.0)
V Rcpp 1.0.10 2023-07-06 [1] CRAN (R 4.3.0) (on disk 1.0.11)
remotes 2.4.2 2021-11-30 [1] CRAN (R 4.3.0)
rlang 1.1.1 2023-04-28 [1] CRAN (R 4.3.0)
V rmarkdown 2.22 2023-08-14 [1] CRAN (R 4.3.0) (on disk 2.24)
rprojroot 2.0.3 2022-04-02 [1] CRAN (R 4.3.0)
rstudioapi 0.14 2022-08-22 [1] CRAN (R 4.3.0)
scales 1.2.1 2022-08-20 [1] CRAN (R 4.3.0)
sessioninfo 1.2.2 2021-12-06 [1] CRAN (R 4.3.0)
shiny 1.7.4 2022-12-15 [1] CRAN (R 4.3.0)
snakecase 0.11.0 2019-05-25 [1] CRAN (R 4.3.0)
stringi 1.7.12 2023-01-11 [1] CRAN (R 4.3.0)
stringr 1.5.0 2022-12-02 [1] CRAN (R 4.3.0)
tibble 3.2.1 2023-03-20 [1] CRAN (R 4.3.0)
tidyr 1.3.0 2023-01-24 [1] CRAN (R 4.3.0)
tidyselect 1.2.0 2022-10-10 [1] CRAN (R 4.3.0)
timechange 0.2.0 2023-01-11 [1] CRAN (R 4.3.0)
urlchecker 1.0.1 2021-11-30 [1] CRAN (R 4.3.0)
usethis * 2.2.1 2023-06-23 [1] CRAN (R 4.3.0)
utf8 1.2.3 2023-01-31 [1] CRAN (R 4.3.0)
vctrs 0.6.3 2023-06-14 [1] CRAN (R 4.3.0)
withr 2.5.0 2022-03-03 [1] CRAN (R 4.3.0)
V xfun 0.39 2023-08-09 [1] CRAN (R 4.3.0) (on disk 0.40)
xtable 1.8-4 2019-04-21 [1] CRAN (R 4.3.0)
yaml 2.3.7 2023-01-23 [1] CRAN (R 4.3.0)
[1] /Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library
V ── Loaded and on-disk version mismatch.
───────────────────────────────────────────────────────────────────────────────────────────────────────────────────────
Hi, same problem here trying to install tlverse!
─ installing the package to process help pages
-----------------------------------
ERROR: dependency ‘imputeMissings’ is not available for package ‘sl3’
─ removing ‘/private/var/folders/t1/kx5d52vs4kg8v_d4hhmg193c0000gn/T/RtmpL5PveW/Rinstec9a470423cb/sl3’
-----------------------------------
ERROR: package installation failed
Error: Failed to install 'tlverse' from GitHub:
Failed to install 'sl3' from GitHub:
! System command 'R' failed
In addition: Warning message:
package ‘imputeMissings’ is not available for this version of R
A version of this package for your version of R might be available elsewhere,
see the ideas at
https://cran.r-project.org/doc/manuals/r-patched/R-admin.html#Installing-packages
Work around:
curl https://cran.r-project.org/src/contrib/Archive/imputeMissings/imputeMissings_0.0.3.tar.gz -o imputeMissings.tar.gz
tar -zxf imputeMissings.tar.gz
R
devtools::install("imputeMissings/")
For convenience, you should also be able to install imputeMissings straight from the former CRAN-source:
devtools::install_github("cran/imputeMissings")
This issue should be fixed on devel now so you can download: devtools::install_github("tlverse/sl3@devel")
