sl3
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tlverse
Devel install error
When trying to download SL3 at devel I get the following error:
remotes::install_github("tlverse/sl3@devel") Downloading GitHub repo tlverse/sl3@devel Error: Failed to install 'sl3' from GitHub: Line starting 'RdM ...' is malformed!
Sorry you’re having install problems, and thanks for filing an issue.
My first thought is that perhaps you’re not using the most recent major version of R, which is 4.2. If that’s the case then hopefully updating R will resolve this. You can check out the version of R that you’re on by calling sessionInfo().
If you’re already using R 4.2, or if you still have the install issue after updating to R 4.2, could you please paste the output to sessionInfo() here?
I can't install sl3 and the problem seems to be the package imputeMIssings is not available on can or GitHub.
R> install_github("tlverse/sl3@devel")
Downloading GitHub repo tlverse/sl3@devel
Skipping 1 packages not available: imputeMissings
── R CMD build ──────────────────────────────────────────────────────────────────────────────────────────────────────────
✔ checking for file ‘/private/var/folders/vz/g1j5pr8n7tg786zcwmv2dx8c0000gp/T/RtmpfjYW9M/remotesb0051fb03685/tlverse-sl3-fa669c7/DESCRIPTION’ ...
─ preparing ‘sl3’:
✔ checking DESCRIPTION meta-information ...
─ installing the package to process help pages
-----------------------------------
ERROR: dependency ‘imputeMissings’ is not available for package ‘sl3’
─ removing ‘/private/var/folders/vz/g1j5pr8n7tg786zcwmv2dx8c0000gp/T/RtmpsQleDd/Rinst1107e74f92463/sl3’
-----------------------------------
ERROR: package installation failed
Error: Failed to install 'sl3' from GitHub:
! System command 'R' failed
R> session_info()
─ Session info ────────────────────────────────────────────────────────────────────────────────────────────────────────
setting value
version R version 4.3.1 (2023-06-16)
os macOS Ventura 13.4.1
system x86_64, darwin20
ui RStudio
language (EN)
collate en_US.UTF-8
ctype en_US.UTF-8
tz America/Toronto
date 2023-08-18
rstudio 2023.06.0+421 Mountain Hydrangea (desktop)
pandoc 3.1.1 @ /Applications/RStudio.app/Contents/Resources/app/quarto/bin/tools/ (via rmarkdown)
─ Packages ────────────────────────────────────────────────────────────────────────────────────────────────────────────
! package * version date (UTC) lib source
backports 1.4.1 2021-12-13 [1] CRAN (R 4.3.0)
broom * 1.0.5 2023-06-09 [1] CRAN (R 4.3.0)
cachem 1.0.8 2023-05-01 [1] CRAN (R 4.3.0)
callr 3.7.3 2022-11-02 [1] CRAN (R 4.3.0)
cli 3.6.1 2023-03-23 [1] CRAN (R 4.3.0)
colorspace 2.1-0 2023-01-23 [1] CRAN (R 4.3.0)
crayon 1.5.2 2022-09-29 [1] CRAN (R 4.3.0)
curl 5.0.1 2023-06-07 [1] CRAN (R 4.3.0)
desc 1.4.2 2022-09-08 [1] CRAN (R 4.3.0)
devtools * 2.4.5 2022-10-11 [1] CRAN (R 4.3.0)
V digest 0.6.32 2023-07-07 [1] CRAN (R 4.3.0) (on disk 0.6.33)
distill * 1.5 2022-09-07 [1] CRAN (R 4.3.0)
downlit 0.4.2 2022-07-05 [1] CRAN (R 4.3.0)
dplyr * 1.1.2 2023-04-20 [1] CRAN (R 4.3.0)
ellipsis 0.3.2 2021-04-29 [1] CRAN (R 4.3.0)
evaluate 0.21 2023-05-05 [1] CRAN (R 4.3.0)
fansi 1.0.4 2023-01-22 [1] CRAN (R 4.3.0)
farver 2.1.1 2022-07-06 [1] CRAN (R 4.3.0)
fastmap 1.1.1 2023-02-24 [1] CRAN (R 4.3.0)
V fs 1.6.2 2023-07-20 [1] CRAN (R 4.3.0) (on disk 1.6.3)
generics 0.1.3 2022-07-05 [1] CRAN (R 4.3.0)
V ggplot2 * 3.4.2 2023-08-14 [1] CRAN (R 4.3.0) (on disk 3.4.3)
glue 1.6.2 2022-02-24 [1] CRAN (R 4.3.0)
gtable 0.3.3 2023-03-21 [1] CRAN (R 4.3.0)
HistData * 0.9-1 2023-08-09 [1] CRAN (R 4.3.0)
V htmltools 0.5.5 2023-08-10 [1] CRAN (R 4.3.0) (on disk 0.5.6)
htmlwidgets 1.6.2 2023-03-17 [1] CRAN (R 4.3.0)
httpuv 1.6.11 2023-05-11 [1] CRAN (R 4.3.0)
janitor * 2.2.0 2023-02-02 [1] CRAN (R 4.3.0)
knitr 1.43 2023-05-25 [1] CRAN (R 4.3.0)
labeling 0.4.2 2020-10-20 [1] CRAN (R 4.3.0)
later 1.3.1 2023-05-02 [1] CRAN (R 4.3.0)
lifecycle 1.0.3 2022-10-07 [1] CRAN (R 4.3.0)
lubridate 1.9.2 2023-02-10 [1] CRAN (R 4.3.0)
magrittr 2.0.3 2022-03-30 [1] CRAN (R 4.3.0)
memoise 2.0.1 2021-11-26 [1] CRAN (R 4.3.0)
mime 0.12 2021-09-28 [1] CRAN (R 4.3.0)
miniUI 0.1.1.1 2018-05-18 [1] CRAN (R 4.3.0)
munsell 0.5.0 2018-06-12 [1] CRAN (R 4.3.0)
pillar 1.9.0 2023-03-22 [1] CRAN (R 4.3.0)
pkgbuild 1.4.2 2023-06-26 [1] CRAN (R 4.3.0)
pkgconfig 2.0.3 2019-09-22 [1] CRAN (R 4.3.0)
pkgload 1.3.2 2022-11-16 [1] CRAN (R 4.3.0)
prettyunits 1.1.1 2020-01-24 [1] CRAN (R 4.3.0)
processx 3.8.2 2023-06-30 [1] CRAN (R 4.3.0)
profvis 0.3.8 2023-05-02 [1] CRAN (R 4.3.0)
promises 1.2.0.1 2021-02-11 [1] CRAN (R 4.3.0)
ps 1.7.5 2023-04-18 [1] CRAN (R 4.3.0)
V purrr 1.0.1 2023-08-10 [1] CRAN (R 4.3.0) (on disk 1.0.2)
R6 2.5.1 2021-08-19 [1] CRAN (R 4.3.0)
V Rcpp 1.0.10 2023-07-06 [1] CRAN (R 4.3.0) (on disk 1.0.11)
remotes 2.4.2 2021-11-30 [1] CRAN (R 4.3.0)
rlang 1.1.1 2023-04-28 [1] CRAN (R 4.3.0)
V rmarkdown 2.22 2023-08-14 [1] CRAN (R 4.3.0) (on disk 2.24)
rprojroot 2.0.3 2022-04-02 [1] CRAN (R 4.3.0)
rstudioapi 0.14 2022-08-22 [1] CRAN (R 4.3.0)
scales 1.2.1 2022-08-20 [1] CRAN (R 4.3.0)
sessioninfo 1.2.2 2021-12-06 [1] CRAN (R 4.3.0)
shiny 1.7.4 2022-12-15 [1] CRAN (R 4.3.0)
snakecase 0.11.0 2019-05-25 [1] CRAN (R 4.3.0)
stringi 1.7.12 2023-01-11 [1] CRAN (R 4.3.0)
stringr 1.5.0 2022-12-02 [1] CRAN (R 4.3.0)
tibble 3.2.1 2023-03-20 [1] CRAN (R 4.3.0)
tidyr 1.3.0 2023-01-24 [1] CRAN (R 4.3.0)
tidyselect 1.2.0 2022-10-10 [1] CRAN (R 4.3.0)
timechange 0.2.0 2023-01-11 [1] CRAN (R 4.3.0)
urlchecker 1.0.1 2021-11-30 [1] CRAN (R 4.3.0)
usethis * 2.2.1 2023-06-23 [1] CRAN (R 4.3.0)
utf8 1.2.3 2023-01-31 [1] CRAN (R 4.3.0)
vctrs 0.6.3 2023-06-14 [1] CRAN (R 4.3.0)
withr 2.5.0 2022-03-03 [1] CRAN (R 4.3.0)
V xfun 0.39 2023-08-09 [1] CRAN (R 4.3.0) (on disk 0.40)
xtable 1.8-4 2019-04-21 [1] CRAN (R 4.3.0)
yaml 2.3.7 2023-01-23 [1] CRAN (R 4.3.0)
[1] /Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library
V ── Loaded and on-disk version mismatch.
───────────────────────────────────────────────────────────────────────────────────────────────────────────────────────
install_github("tlverse/sl3@devel", dependencies = FALSE) also fails with the same error message about the missing package
the package imputeMissings was just archived by CRAN 3 days ago, so this was not caught by our checks; if the package is not restored to CRAN, we will look into removing it as a dependency. in the meantime, you can bypass this by installing archived versions of imputeMissings from CRAN via, e.g.,
install.packages("https://cran.r-project.org/src/contrib/Archive/imputeMissings/imputeMissings_0.0.3.tar.gz")
