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Where is the fold change value

Open JeremyQuo opened this issue 2 years ago • 0 comments

The result tsv file I run from SampComp is like this,

pos chr genomicPos ref_id strand ref_kmer GMM_logit_pvalue KS_dwell_pvalue KS_intensity_pvalue GMM_cov_type GMM_n_clust cluster_counts Logit_LOR 10 NA NA NC_004162.2 NA AGACA 0.3297790012387313 0.4134951318088154 0.00393641138422188 full 2 WT_1:22/26__IVT_1:1035/750 -0.48205942113047806 11 NA NA NC_004162.2 NA GACAC 0.772441640344154 0.8220213747045242 0.0032041583515600935 full 2 WT_1:21/33__IVT_1:830/1075 -0.17694212539156723

I want to know which value is the fold change and the paper said the cutoff is,

Nanocompore: reported p-value<0.01 and GMM log odds ratio>0.5 (for GMM method only).

So, where is GMM log odd ratio, and how to use GMM only, I don't see it on https://nanocompore.rna.rocks/demo/SampComp_usage/

JeremyQuo avatar Oct 18 '22 04:10 JeremyQuo