Trevor Lancon

2D+T not loaded back into Aivia correctly

1

Need to specify axes using imsave Example with skimage: skimage.io.imsave(resultLocation, outputData, None, {'axes':'XYZ'}) Example with tifffile: tifffile.imsave(f"{outpath}/my_TZCYX_data.tif", data, metadata={'axes': 'TZCYX'}) Do we need to say which axes are present for...

Allows segmenting across multiple Z with superpixels

Test using tifffile directly for imread/imsave

2

Allows more control over handling metadata and can fix issue with 2D+T

Add API documentation to README

1

May need to branch this into its own file at some point, but for now we need to translate the example from the devs into the README

The Aivia log is insightful, but mostly hidden from users. Make a section in README to show how to most rapidly develop and debug Python recipes by passing back/forth between...