napari-omero
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tlambert03
Browse your OMERO database from within napari.
Dear @tlambert03 , thank you for making this napari plugin available! It's already super user friendly! I particularly like the browsing of images within a dataset and easy loading in...
The napari-omero plugin fails to load large images from OMERO. This is not too surprising given the use of PixelService to read image data. This image size is 230144x96256x3. I...
See https://github.com/tlambert03/napari-omero/pull/14#discussion_r446664444 When opening an Image from OMERO, it will be useful to store the ID of that Image in the layer metadata, E.g. ```get_omero_metadata()``` could include ``` 'metadata': {'omero_id':...
I keep forgetting to use `omero napari view Image:1` rather than `napari_omero Image:1` and then end up wondering where the "Save ROIs to OMERO` button is.
See https://github.com/tlambert03/napari-omero/pull/17#pullrequestreview-441080882 Use [`napari_write_shapes`](https://napari.org/docs/plugins/hook_specifications.html#napari.plugins.hook_specifications.napari_write_shapes) and [`napari_write_labels`](https://napari.org/docs/plugins/hook_specifications.html#napari.plugins.hook_specifications.napari_write_labels) writer plugins to allow saving ROIs to OMERO. This has the advantage that we don't need to clutter the UI with "Save to OMERO"...
I'm able to connect to our Omero server using the master branch pulled from GIT, but when I attempt to pull an image I get a crash. The minimal reproducible...
The directories are unstructured when loading the GUI with `napari_omero`. * many of my datasets are missing * datasets from other users are shown * would be helpful if the...
Hi @tlambert03. I gave napari-omero a try yesterday. Very nice! I'm bundling together a couple of issues I ran into for general discussion, but I'm happy to break them out...