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Bump the uv-dependencies group across 1 directory with 15 updates

Open dependabot[bot] opened this issue 4 months ago • 0 comments

Bumps the uv-dependencies group with 15 updates in the / directory:

Package From To
biopython 1.85 1.86
django-anymail 10.0 13.1
django-crispy-forms 1.13.0 2.4
django-reversion-compare 0.19.0 0.19.1
django 5.2.7 5.2.8
drf-spectacular 0.28.0 0.29.0
google-auth 2.41.1 2.42.1
numpy 2.2.6 2.3.4
django-structlog 9.1.1 10.0.0
scout-apm 3.4.0 3.5.0
structlog 25.4.0 25.5.0
djangorestframework-stubs 3.16.4 3.16.5
ipython 9.6.0 9.7.0
prek 0.2.11 0.2.13
ruff 0.14.1 0.14.3

Updates biopython from 1.85 to 1.86

Changelog

Sourced from biopython's changelog.

28 October 2025: Biopython 1.86

This release of Biopython supports Python 3.10, 3.11, 3.12, 3.13 and 3.14. It has also been tested on PyPy3.10 v7.3.19.

Bio.SearchIO now supports parsing the tabular and plain text output of Infernal <http://eddylab.org/infernal/> (v1.0.0+) RNA search tool. The format names are infernal-tab and infernal-text.

The default value of the gap score of a PairwiseAligner object was changed in this release. Previously, for consistency with Bio.pairwise2, the default value for gap score was 0. However, this means that a mismatch, an insertion followed by a deletion, and a deletion followed by an insertion all get assigned a score of 0. The aligner then finds a large number of alignments that are logically the same, but have trivial differences between them. For example, aligning AAACAAA to AAAGAAA previously yielded the following three alignments, all with score 6::

 AAACAAA        AAAC-AAA        AAA-CAAA
 AAAGAAA        AAA-GAAA        AAAG-AAA

With the new default parameter for the gap score, only the first alignment is returned.

Bio.PDB.PDBIO now ensures that b-factor values are always at most 6 characters to ensure that we do not violate the wwPDB specification. This should not have an impact on the majority of uses, as b-factor values are generally small (less than 100). When 1000 <= b-factor < 10_000, the value is rounded to a single decimal place. When, 10_000 <= b-factor < 999_999, the value is rounded to zero decimal places. Values above 999_999 are now clamped. The justification for this is the rise in the b-factor field being used for additional metadata, typically from computational tools.

Bio.Align now provides a method Alignment.from_alignments_with_same_reference to construct a multiple sequence alignment from a collection of alignments that share the same reference sequence.

Bio.PDB.PDBIO will now raise module specific warnings: Bio.PDB.PDBExceptions.PDBIOWarning.

Bio.PDB.SCADIO now supports object selection by color in the OpenSCAD output file. This enables generation of separate STL files for each color for printing protein structures on multi-material 3D printers.

The iplotx library is mentioned in the Tutorial as an option to visualise trees using complex style options.

Many thanks to the Biopython developers and community for making this release possible, especially the following contributors:

... (truncated)

Commits

Updates django-anymail from 10.0 to 13.1

Release notes

Sourced from django-anymail's releases.

v13.1

Changelog

v13.0.1

Changelog

v13.0

Changelog

v12.0

Changelog

v11.1

Changelog

v11.0.1

Changelog

(This release is solely to update documentation and metadata. Code is identical to v11.0.)

v11.0

  • Breaking changes for Amazon SES; SparkPost (with template_id)
  • New merge_headers feature
  • And more…

Please check the changelog

v10.3

Changelog

v10.2

Changelog

v10.1

Changelog

Changelog

Sourced from django-anymail's changelog.

v13.1

2025-09-03

Features


* **Scaleway:** Add support for this ESP.
  (See `docs <https://anymail.dev/en/stable/esps/scaleway/>`__.
  Thanks to `@hleroy`_ for the contribution.)

    

  • SendGrid: Add optional signature verification for tracking webhooks.
To support this, Anymail now includes the :pypi:cryptography package when
installed with the django-anymail[sendgrid] extra.
(Thanks to @blag_ for contributing this improvement. Note this was tested
against SendGrid's live API by its contributor at the time it was added,
but cannot be independently verified by Anymail's maintainers as we
no longer have access &lt;https://github.com/anymail/django-anymail/issues/432&gt;__
to a SendGrid test account.)
    • 



v13.0.1


2025-07-25


Breaking changes (external)
  • SendGrid: Anymail no longer officially supports SendGrid, because we are unable to test it. Although it will probably keep working, you'll get warnings about this change in status. See Dropping support for SendGrid <https://github.com/anymail/django-anymail/issues/432>__ for details and actions SendGrid customers can take. (Since this breaking change is due to external causes and impacts SendGrid users on all versions of Anymail, it is being handled as a minor patch release rather than a semver major version change.)

Fixes


* **Amazon SES:** Require boto3 1.24.6 or later to ensure support for the SESv2
  close method. (Thanks to `@mgibeau`_ for identifying the issue.)

v13.0


2025-04-03
</tr></table>

... (truncated)

Commits
  • 74b5e25 Release 13.1
  • 12f2032 Scaleway: cleanup and enable integration tests
  • 8be0aaa Readme: fix test status badges
  • 90367b3 Scaleway: new ESP
  • 4b2d6f8 SendGrid: Add optional webhook signature verification
  • b8a5ee8 CI: fix typo in release.yml
  • 30c6130 Release 13.0.1
  • 6b27bd9 CI: fix outdated Django 5.2 alpha reference
  • dfa4ce0 SendGrid: change to "unsupported" status
  • c29c993 Fix lint
  • Additional commits viewable in compare view

Updates django-crispy-forms from 1.13.0 to 2.4

Release notes

Sourced from django-crispy-forms's releases.

2.4

  • Added support for Python 3.13.
  • Confirmed support for Django 5.2.

2.3

What's Changed

  • Fixed unexpected addition the 'active' css_class to AccordionGroup

2.2

  • Added support for Django 5.1.
  • Allowed pass through of context when rendering a Fieldset layout object.

Full Changelog: https://github.com/django-crispy-forms/django-crispy-forms/compare/2.1...2.2

2.1

What's Changed

  • Added support for Django 5.0.
  • Dropped support for Django 3.2, 4.0 and 4.1.
  • Added support for Python 3.12.
  • Dropped support for Python 3.7.

New Contributors

Full Changelog: https://github.com/django-crispy-forms/django-crispy-forms/compare/2.0...2.1

2.0 (2023-02-13)

Major Changes and Migration Guide

  • Removed all Bootstrap template packs. These template packs are now available as standalone packages. To upgrade, install the required template pack and add it to your INSTALLED_APPS setting.

    Also, support for Bootstrap 5 is provided by a 3rd party package under the django-crispy-forms organisation at crispy-bootstrap5.

  • Removed uni-form template pack. Uni-Form specific classes previously added to every template pack e.g. textInput are now removed. If you require these classes, the previous behaviour can be restored by adding the following to CRISPY_CLASS_CONVERTERS in your settings file.

      converters = {

... (truncated)

Changelog

Sourced from django-crispy-forms's changelog.

2.4 (2025-04-13)

  • Added support for Python 3.13.
  • Confirmed support for Django 5.2.

2.3 (2024-07-19)

  • Fixed a bug in AccordionGroup rendering then it gets an unexpected css class active.

2.2 (2024-06-15)

  • Added support for Django 5.1.
  • Allowed pass through of context when rendering a Fieldset layout object.

2.1 (2023-10-15)

  • Added support for Django 5.0.
  • Dropped support for Django 3.2, 4.0 and 4.1.
  • Added support for Python 3.12.
  • Dropped support for Python 3.7.

See the 2.1 Milestone for the full change list.

2.0 (2023-02-13)

Release of django-crispy-forms 2.0. No changes introduced since 2.0a1.

2.0a1 (2023-01-18)

Major Changes and Migration Guide

  • Removed all Bootstrap template packs. These template packs are now available as standalone packages. To upgrade, install the required template pack and add it to your INSTALLED_APPS setting.

    Also, support for Bootstrap 5 is provided by a 3rd party package under the django-crispy-forms organisation at crispy-bootstrap5.

  • Removed uni-form template pack. Uni-Form specific classes previously added to every template pack e.g. textInput are now removed. If you require these classes, the previous behaviour can be restored by adding the following to CRISPY_CLASS_CONVERTERS in your settings file.

      converters = {
    "textinput": "textinput textInput",
    "fileinput": "fileinput fileUpload",
    "passwordinput": "textinput textInput",
}

  • The uni-form template pack allowed for rendering of templates using a default or inline layout. As the uni-form template pack has been removed support for this has also been removed. This has resulted in the following BREAKING changes.

... (truncated)

Commits

Updates django-reversion-compare from 0.19.0 to 0.19.1

Commits

Updates django from 5.2.7 to 5.2.8

Commits
  • 47fe39a [5.2.x] Bumped version for 5.2.8 release.
  • ac9fcf6 [5.2.x] Refs CVE-2025-64459 -- Avoided propagating invalid arguments to Q on ...
  • 6703f36 [5.2.x] Fixed CVE-2025-64459 -- Prevented SQL injections in Q/QuerySet via th...
  • 4f5d904 [5.2.x] Fixed CVE-2025-64458 -- Mitigated potential DoS in HttpResponseRedire...
  • cbdf128 [5.2.x] Fixed #36704 -- Fixed system check error for proxy model with a compo...
  • 6775888 [5.2.x] Fixed #36696 -- Fixed NameError when inspecting functions with deferr...
  • d5dfffa [5.2.x] Added stub release notes and release date for 5.2.8, 5.1.14, and 4.2.26.
  • 368f955 [5.2.x] Fixed #36681 -- Removed English pluralization bias from example in do...
  • 71267c9 [5.2.x] Fixed #35095 -- Clarified Swiss number formatting in docs/topics/i18n...
  • 9b37bd5 [5.2.x] Made RemoteTestResultTest.test_pickle_errors_detection() compatible w...
  • Additional commits viewable in compare view

Updates drf-spectacular from 0.28.0 to 0.29.0

Release notes

Sourced from drf-spectacular's releases.

0.29.0

Thank you for all the patience with the release!

Important notes

  • Finally fixed the memory leak thanks to @​artKucher.
  • Another performance improvement is the usage of the C versions of yaml, if available.
  • Apart from that, there are a lot of small improvements and bugfixes.

PRs

New Contributors

... (truncated)

Changelog

Sourced from drf-spectacular's changelog.

0.29.0 (2025-11-01)

  • Add l18n handling for Decimal field [#1466](https://github.com/tfranzel/drf-spectacular/issues/1466) <https://github.com/tfranzel/drf-spectacular/issues/1466>_
  • Fix LogoutSerializer for JWT/dj_rest_auth [#1392](https://github.com/tfranzel/drf-spectacular/issues/1392) <https://github.com/tfranzel/drf-spectacular/issues/1392>_
  • fix: support token blacklist feature in rest_auth [Bart van Andel]
  • [django-filter] Add null_label if set in ChoiceFilter ([#1450](https://github.com/tfranzel/drf-spectacular/issues/1450) <https://github.com/tfranzel/drf-spectacular/issues/1450>_) [Enric Pou]
  • fix: camelize tuples/fixed length array ([#1432](https://github.com/tfranzel/drf-spectacular/issues/1432) <https://github.com/tfranzel/drf-spectacular/issues/1432>_) [Chris Wesseling]
  • Fix items:False case in enum hook [#1432](https://github.com/tfranzel/drf-spectacular/issues/1432) <https://github.com/tfranzel/drf-spectacular/issues/1432>_
  • Add option to overwrite serializer description [#1463](https://github.com/tfranzel/drf-spectacular/issues/1463) <https://github.com/tfranzel/drf-spectacular/issues/1463>_
  • Fix OpenApiViewExtension not providing view instance under self.target ([#1405](https://github.com/tfranzel/drf-spectacular/issues/1405) <https://github.com/tfranzel/drf-spectacular/issues/1405>_) [astro-stan]
  • Move list default fix to source of the problem [#1436](https://github.com/tfranzel/drf-spectacular/issues/1436) <https://github.com/tfranzel/drf-spectacular/issues/1436>_
  • Improve confusing doc [#1461](https://github.com/tfranzel/drf-spectacular/issues/1461) <https://github.com/tfranzel/drf-spectacular/issues/1461>_
  • Add assert to pagination test [#1459](https://github.com/tfranzel/drf-spectacular/issues/1459) <https://github.com/tfranzel/drf-spectacular/issues/1459>_
  • fix SafeString handling for picky CDumper ([#1435](https://github.com/tfranzel/drf-spectacular/issues/1435) <https://github.com/tfranzel/drf-spectacular/issues/1435>_)
  • Remove EOL 3.7 from suite; pydantic not updated for <=3.8
  • Fix DecimalField with decimal_places and max_digits equal. [keter2002]
  • fix test for i18n changes on DRF ([#1444](https://github.com/tfranzel/drf-spectacular/issues/1444) <https://github.com/tfranzel/drf-spectacular/issues/1444>_)
  • Improve to_filter_name support for django_filter [Matwey V. Kornilov]
  • fixes prefix estimation on windows [Luis Nell]
  • Fix default for array types [Stanislav Khlud]
  • fix: use CSafeDumper for render yaml if available [florian]
  • fix: sort list to produce same hash [florian]
  • Add typing.Generic to default lib_doc_excludes [Max Howald]
  • Add get_doc test for class that inherits from Generic [Max Howald]
  • Add Django REST framework 3.16 support [Paolo Melchiorre]
  • Fix memory leak [artemkucher]
  • Fix python 3.11 slice index [Egor Litvinov]
  • fix: correct port mapping for the container in README [Maksym Bieńkowski]
  • Update docs [q0w]
  • Allow setting callable for ENUM_NAME_OVERRIDES [q0w]
  • Add allauth's DRF token auth [#1401](https://github.com/tfranzel/drf-spectacular/issues/1401) <https://github.com/tfranzel/drf-spectacular/issues/1401>_
  • update away from retired GH worker image
  • add condition to check, that serializer Meta has model attribute [aliev_vt]
  • Fix docs compile issue and update some old code ([#1389](https://github.com/tfranzel/drf-spectacular/issues/1389) <https://github.com/tfranzel/drf-spectacular/issues/1389>_) [Mike Manger]
  • Fix location of @​extend_schema_field [johnthagen]
  • Remove reference to non-exposed lazy_serializer [johnthagen]
  • Document how to lazily define a recursive SerializerMethod [johnthagen]
  • Link to SerializerMethod docs [johnthagen]
  • Document Django 5.1 support in README [johnthagen]
  • Bump django from 4.2.11 to 4.2.18 in /requirements [dependabot[bot]]
  • Enhance bug report template with instructions for better clarity [antoliny0919]
  • add pydantic computed field to tests [#1354](https://github.com/tfranzel/drf-spectacular/issues/1354) <https://github.com/tfranzel/drf-spectacular/issues/1354>_

Breaking changes / important additions:

  • Finally fixed the memory leak thanks to @​artKucher.
  • Another performance improvement is the usage of the C versions of yaml, if available.
  • Apart from that, there are a lot of small improvements and bugfixes.
Commits

Updates google-auth from 2.41.1 to 2.42.1

Release notes

Sourced from google-auth's releases.

v2.42.1

2.42.1 (2025-10-30)

Bug Fixes

v2.42.0

2.42.0 (2025-10-24)

Features

  • Add trust boundary support for external accounts. (#1809) (36ecb1d)

Bug Fixes

  • Read scopes from ADC json for impersoanted cred (#1820) (62c0fc8)
Changelog

Sourced from google-auth's changelog.

2.42.1 (2025-10-30)

Bug Fixes

2.42.0 (2025-10-24)

Features

  • Add trust boundary support for external accounts. (#1809) (36ecb1d)

Bug Fixes

  • Read scopes from ADC json for impersoanted cred (#1820) (62c0fc8)
Commits

Updates numpy from 2.2.6 to 2.3.4

Release notes

Sourced from numpy's releases.

v2.3.4 (Oct 15, 2025)

NumPy 2.3.4 Release Notes

The NumPy 2.3.4 release is a patch release split between a number of maintenance updates and bug fixes. This release supports Python versions 3.11-3.14. This release is based on Python 3.14.0 final.

Changes

The npymath and npyrandom libraries now have a .lib rather than a .a file extension on win-arm64, for compatibility for building with MSVC and setuptools. Please note that using these static libraries is discouraged and for existing projects using it, it's best to use it with a matching compiler toolchain, which is clang-cl on Windows on Arm.

(gh-29750)

Contributors

A total of 17 people contributed to this release. People with a "+" by their names contributed a patch for the first time.

  • !DWesl
  • Charles Harris
  • Christian Barbia +
  • Evgeni Burovski
  • Joren Hammudoglu
  • Maaz +
  • Mateusz Sokół
  • Matti Picus
  • Nathan Goldbaum
  • Ralf Gommers
  • Riku Sakamoto +
  • Sandeep Gupta +
  • Sayed Awad
  • Sebastian Berg
  • Sergey Fedorov +
  • Warren Weckesser
  • dependabot[bot]

Pull requests merged

A total of 30 pull requests were merged for this release.

  • #29725: MAINT: Prepare 2.3.x for further development
  • #29781: MAINT: Pin some upstream dependences
  • #29782: BLD: enable x86-simd-sort to build on KNL with -mavx512f
  • #29783: BUG: Include python-including headers first (#29281)
  • #29784: TYP: fix np.number and np.*integer method declaration
  • #29785: TYP: mypy 1.18.1

... (truncated)

Commits
  • 1458b9e REL: Prepare for the NumPy 2.3.4 release (#29955)
  • 7583bed Merge pull request #29950 from charris/backport-29885
  • 3186751 Merge pull request #29949 from charris/backport-29948
  • 7fd2ad9 STY: rename @classmethod arg to cls
  • fe8447d MAINT: Simplify string arena growth strategy (#29885)
  • a90f073 Merge pull request #29940 from charris/backport-29937
  • 55d91ab MAINT: Bump pypa/cibuildwheel from 3.1.4 to 3.2.1
  • e2f0383 Merge pull request #29926 from charris/backport-29609
  • b427e83 BUG: fix negative samples generated by Wald distribution (#29609)
  • 36363d6 Merge pull request #29922 from charris/backport-29914
  • Additional commits viewable in compare view

Updates django-structlog from 9.1.1 to 10.0.0

Changelog

Sourced from django-structlog's changelog.

10.0.0 (October 22, 2025)

New: - Add 5xx and cancelled request log level config. See [#935](https://github.com/jrobichaud/django-structlog/issues/935) <https://github.com/jrobichaud/django-structlog/pull/935>. Special thanks to @fcortes <https://github.com/fcortes>. - Add python 3.14 support. See [#937](https://github.com/jrobichaud/django-structlog/issues/937) <https://github.com/jrobichaud/django-structlog/pull/937>_.

Changes: - Drop python 3.9 support.

Commits
  • 6c2feb5 Merge pull request #938 from jrobichaud/fix-readme
  • efcd704 fix error in readme (gotta add a checker)
  • fa277f6 Merge pull request #937 from jrobichaud/python-3.14
  • 238d813 Fix mypy regression when dropping 3.9
  • ee56156 Add python 3.14 support
  • f46461e Merge pull request #936 from jrobichaud/update-changelog
  • c76d11f update changelog
  • fbc9dea Merge pull request #935 from fcortes/add-access-log-level-config
  • a86d073 feat(env): add REQUEST_CANCELLED_LOG_LEVEL config
  • 9268401 feat(env): add STATUX_5XX_LOG_LEVEL config
  • Additional commits viewable in compare view

Updates scout-apm from 3.4.0 to 3.5.0

Changelog

Sourced from scout-apm's changelog.

[3.5.0] 2025-10-31

Added

  • Instrumentation for FastMCP via fastmcp.ScoutMiddleware (#818)
  • Formal support for Python 3.13 and 3.14 (#819)
  • Formal support for Django 5.1 and 5.2
  • Use strict data filter for tar extraction (#820)

Removed

  • Formal Python 3.9 support.
Commits

Updates structlog from 25.4.0 to 25.5.0

Release notes

Sourced from structlog's releases.

25.5.0

Highlights

Huge release! There's plenty of important little bug fixes and new features, but the headliner is definitely the improved ergonomics of structlog.dev.ConsoleRenderer. We have finally accepted that local development has different priorities than production and made it both mutable (with automatic re-configuration) and also easily retrievable (cr = ConsoleRenderer.get_active()). This allows you, for example, to disable Rich exception formatting as easily as structlog.dev.ConsoleRenderer.get_active().exception_formatter = structlog.dev.plain_traceback. Please check out the updated docs!

Full changelog below!

Special Thanks

This release would not be possible without my generous sponsors! Thank you to all of you making sustainable maintenance possible! If you would like to join them, go to https://github.com/sponsors/hynek and check out the sweet perks!

Above and Beyond

Variomedia AG (@variomedia), Tidelift (@tidelift), thanks.dev (@thnxdev), Privacy Solutions GmbH (@privacy-solutions), Quesma (@​QuesmaOrg), FilePreviews (@filepreviews), LambdaTest (@LambdaTest-Inc), Doist (@Doist), Daniel Fortunov (@asqui), and Kevin P. Fleming (@kpfleming).

Maintenance Sustainers

Buttondown (@buttondown), Jeff McCarrell (@jmccarrell), Christopher Dignam (@chdsbd), Magnus Watn (@magnuswatn), David Cramer (@dcramer), Jesse Snyder (@jessesnyder), Rivo Laks (@rivol), Polar (@polarsource), Mike Fiedler (@miketheman), Duncan Hill (@cricalix), Colin Marquardt (@cmarqu), Pieter Swinkels (@swinkels), Nick Libertini (@libertininick), Brian M. Dennis (@crossjam), Celebrity News AG (@celebritynewsag), The Westervelt Company (@westerveltco), Sławomir Ehlert (@slafs), Mostafa Khalil (@khadrawy), Filip Mularczyk (@mukiblejlok), Thomas Klinger (@thmsklngr), Andreas Poehlmann (@ap--), August Trapper Bigelow (@atbigelow), Carlton Gibson (@carltongibson), Roboflow (@roboflow), and Jeff McCarrell (@jmccarrell).

Full Changelog

Deprecated

  • structlog.dev.ConsoleRenderer()'s pad_event argument has been renamed to pad_event_to to differentiate it from the boolean pad_level argument. pad_event is now deprecated.

Added

  • Added structlog.dev.ConsoleRenderer.get_active() that returns the currently active structlog.dev.ConsoleRenderer(). #749

  • structlog.dev.ConsoleRenderer() now supports setting the exception_formatter attribute.

    You can now disable the pretty-printing of exceptions by setting it to structlog.dev.plain_traceback:

    cr = structlog.dev.ConsoleRenderer.get_active()
cr.exception_formatter = structlog.dev.plain_traceback

    Same goes for sort_keys, columns, colors, force_colors, level_styles, pad_event_to, event_key, timestamp_key, and repr_native_str.

    #749 #756 #757 #759

  • Added structlog.dev.ConsoleRenderer.get_default_column_styles() for reuse the default column styles. #741

  • structlog.testing.capture_logs() now optionally accepts processors to apply before capture. #728

... (truncated)

Changelog

Sourced from structlog's changelog.

25.5.0 - 2025-10-27

Deprecated

  • structlog.dev.ConsoleRenderer()'s pad_event argument has been renamed to pad_event_to to differentiate it from the boolean pad_level argument. pad_event is now deprecated.

Added

  • Added structlog.dev.ConsoleRenderer.get_active() that returns the currently active structlog.dev.ConsoleRenderer(). #749

  • structlog.dev.ConsoleRenderer() now supports setting the exception_formatter attribute.

    You can now disable the pretty-printing of exceptions by setting it to structlog.dev.plain_traceback:

    cr = structlog.dev.ConsoleRenderer.get_active()
cr.exception_formatter = structlog.dev.plain_traceback

    Same goes for sort_keys, columns, colors, force_colors, level_styles, pad_event_to, event_key, timestamp_key, and repr_native_str.

    #749 #756 #757 #759

  • Added structlog.dev.ConsoleRenderer.get_default_column_styles() for reuse the default column styles. #741

  • structlog.testing.capture_logs() now optionally accepts processors to apply before capture. #728

  • structlog.dev.RichTracebackFormatter now exposes the upstream code_width parameter. Default width is now None for full terminal width. Full terminal width is now handled by Rich itself, bringing support for reflow and COLUMN environment variable. Passing -1 for width is now deprecated and automatically replaced by ...

    Description has been truncated

dependabot[bot] avatar Nov 05 '25 18:11 dependabot[bot]