3DUnet-Tensorflow-Brats18

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How to show segmentation result(different colours) on Original image like in your Readme?I tried findcontours, but it not work,thank you!

4

How to show segmentation result(different colours) on Original image like in your Readme?I tried findcontours, but it not work,thank you!

Johncheng1

AssertionError

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Traceback (most recent call last): File "D:\1_Deep_learning\codes\Segmentation Deep learing\3DUnet-Tensorflow-Brats18-master\train.py", line 211, in data=QueueInput(get_train_dataflow()), File "D:\1_Deep_learning\codes\Segmentation Deep learing\3DUnet-Tensorflow-Brats18-master\data_sampler.py", line 240, in get_train_dataflow ds = BatchData(MapData(ds, preprocess), config.BATCH_SIZE) File "D:\1_Deep_learning\codes\Segmentation Deep learing\3DUnet-Tensorflow-Brats18-master\data_sampler.py",...

davidiommi

Thanks for your open source First, I have a bug, Your code had killed or hanging program when finished epoch 1, not continues training with epoch 2... Would you like...

vvuonghn

I run the code with patch '128x128x128', and cuda out of memory. So I change patch size to '20x128x128'，and it says that: ValueError: Dimension 0 in both shapes must be...

yan4821567

Hello! I am trying to save the model generated once the _train.py_ has been completed succesfully. I am not familiar with tensorflow nor keras, so I really don't know where...

olalla1999

ZMQ ICP ERROR

3

Traceback (most recent call last): File "train.py", line 211, in data=QueueInput(get_train_dataflow()), File "C:\Users\idir.hired\Desktop\algoSeg\3DUnet-Tensorflow-Brats18-master\data_sampler.py", line 242, in get_train_dataflow ds = PrefetchDataZMQ(ds, 6) File "C:\Users\idir.hired\AppData\Local\Continuum\anaconda3\envs\table1\lib\site-packages\tensorpack\dataflow\parallel.py", line 274, in __init__ super(PrefetchDataZMQ, self).__init__() File...

hired-idir

To Set up environment kindly provide the requirements.txt

csrvictory

Training error: CUDA_ERROR_OUT_OF_MEMORY

12

I train with my own data set, don't use 5 fold cross validation. Though I set PATCH_SIZE = [24, 24, 128], BATCH_SIZE = 1. Always reporting mistakes as follow: Could...

Getsatrt11

I'm running this model on single 1080ti, and the nvidia-smi show that i've already dumped 8G data into GPU while the utilization rate of GPU remain 0% during most time....

bonjoura

How can I get the gif image like in your readme?

5

hjyai94