pubmed_parser
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It couldn't recognize the xml file I downloaded from pubmed
I have downloaded the xml file from "https://ftp.ncbi.nlm.nih.gov/pubmed/baseline/" and then
{
"name": "XPathEvalError",
"message": "Error in xpath expression",
"stack": "---------------------------------------------------------------------------
XPathEvalError Traceback (most recent call last)
Cell In[14], line 3
1 import pubmed_parser as pp
2 path_xml = pp.list_xml_path(\"...\xml\")
----> 3 pubmed_dict = pp.parse_pubmed_xml(path_xml[0]) # dictionary output
4 print(pubmed_dict)
File ......\\pubmed_parser\\pubmed_oa_parser.py:182, in parse_pubmed_xml(path, include_path, nxml)
179 subjects = \"\"
181 # create affiliation dictionary
****--> 182 affil_id = tree.xpath(\".//aff[@id]/@id\")****
183 if len(affil_id) > 0:
184 affil_id = list(map(str, affil_id))
File src\\\\lxml\\\\etree.pyx:2342, in lxml.etree._ElementTree.xpath()
File src\\\\lxml\\\\xpath.pxi:342, in lxml.etree.XPathDocumentEvaluator.__call__()
File src\\\\lxml\\\\xpath.pxi:210, in lxml.etree._XPathEvaluatorBase._handle_result()
XPathEvalError: Error in xpath expression"
}