Sam T

slicing fails on multiple regions

2

When submitting a character list to slice() (works given a single region but not multiple) Error: Tried to unbox a vector of length 2 follow error to code unbox(regions)

Suggestions for arguments to AA to tweak?

1

I have a few WGS samples (matched T/N) at 80X with relatively high purity and have matched FISH showing ecDNA with the target gene. I ran amplicon architect suite with...

for GAIN (many states) with WGD annotated as a -1 numeric call (TCN=5). Consider changing to 1 as it's a GAIN.