timz0605

Error encountered in mt_assembly using mitoz all command

2

## MitoZ version? 3.4 ## How did you install MitoZ? (e.g. Docker, Udocker, Singularity, Conda-Pack, Conda, or source code) Conda-Pack ## Did you run a test after your installation, and...

2 Mitogenomes in One Sample

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Hello, I am using MitoZ to derive the mitogenome of some Porifera and Cnidaria species. They are usually more difficult to work with (especially sponges). There is one sample that...

Does fastp remove primer sequences for aplicon sequencing results?

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Hello, I've been going through the documentation and trying to find options for primer trimming. I am unsure whether the adapter trimming option could also trim primers. Another thing I...

Convert Qiime2 database (2 files) into fasta database (1 file) for taxonomic assignment in vsearch

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Hello! I am working on a COI metabarcoding project for animals. I currently have two database files, one fasta file containing all sequences and the other txt file containing taxonomic...

Installation failed

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Hello! I was trying to install the package using `BiocManager::install("rhdf5")`, but have been encountering this issue. I am trying to install the package through R 4.2.1 on HPC. Even though...

Hello, I am trying to use `install.packages("hdf5r")` on the R shell in HPC for installing the package, but I have been encountering difficulties. I was wondering if anyone could help...

Hello, I am working with COI metabarcoding data of 24 samples, and there are many zeroes in the data frame, as some zotus are not detected in certain samples. I...

How to Collect Guides for All PCoA Plots?

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Hello! First of all, this is an awesome package, and thank you so much! I constructed 6 ordination plots with my data, and I am trying to collect them together....