VESPA
VESPA copied to clipboard
Published
20 hours ago •
timothydmorton
timothydmorton
nedsearch file missing
https://github.com/timothydmorton/VESPA/blob/331e10c379edbbee13e475d80eb439c15070c4a3/vespa/stars/extinction.py#L41
After installing vespa, I run calcfpp as follows
$ calcfpp
WARNING:root:PyMultiNest not imported. MultiNest fits will not work.
WARNING:root:sklearn not available
WARNING:root:progressbar not imported
WARNING:root:Cadence not provided in fpp.ini; defaulting to Kepler cadence.
Cadence not provided in fpp.ini; defaulting to Kepler cadence.
WARNING:root:If this is not a Kepler target, please set cadence (in days).
If this is not a Kepler target, please set cadence (in days).
INFO:root:Fitting transitsignal with MCMC...
Fitting transitsignal with MCMC...
INFO:root:Fitting data to trapezoid shape with MCMC for 211314705....
Fitting data to trapezoid shape with MCMC for 211314705....
INFO:root:Generating ['beb', 'heb', 'eb', 'beb_Px2', 'heb_Px2', 'eb_Px2', 'pl'] models for PopulationSet...
Generating ['beb', 'heb', 'eb', 'beb_Px2', 'heb_Px2', 'eb_Px2', 'pl'] models for PopulationSet...
INFO:root:15471 eclipsing HEB systems generated (target 20000)
15471 eclipsing HEB systems generated (target 20000)
INFO:root:20982 eclipsing HEB systems generated (target 20000)
20982 eclipsing HEB systems generated (target 20000)
INFO:root:Fitting trapezoid models for HEBs...
Fitting trapezoid models for HEBs...
INFO:root:Done.
Done.
INFO:root:17277 eclipsing HEB systems generated (target 20000)
17277 eclipsing HEB systems generated (target 20000)
INFO:root:20741 eclipsing HEB systems generated (target 20000)
20741 eclipsing HEB systems generated (target 20000)
INFO:root:Fitting trapezoid models for HEBs (Double Period)...
Fitting trapezoid models for HEBs (Double Period)...
ERROR:root:No eclipse registered for star 12220
No eclipse registered for star 12220
INFO:root:Done.
Done.
INFO:root:14970 Eclipsing EB systems generated (target 20000)
14970 Eclipsing EB systems generated (target 20000)
INFO:root:20940 Eclipsing EB systems generated (target 20000)
20940 Eclipsing EB systems generated (target 20000)
INFO:root:Fitting trapezoid models for EBs...
Fitting trapezoid models for EBs...
INFO:root:Done.
Done.
INFO:root:16754 Eclipsing EB systems generated (target 20000)
16754 Eclipsing EB systems generated (target 20000)
INFO:root:20653 Eclipsing EB systems generated (target 20000)
20653 Eclipsing EB systems generated (target 20000)
INFO:root:Fitting trapezoid models for EBs (Double Period)...
Fitting trapezoid models for EBs (Double Period)...
ERROR:root:No eclipse registered for star 1839
No eclipse registered for star 1839
ERROR:root:No eclipse registered for star 2875
No eclipse registered for star 2875
INFO:root:Done.
Done.
INFO:root:Getting TRILEGAL simulation at 129.129927, 10.147280...
Getting TRILEGAL simulation at 129.129927, 10.147280...
/bin/sh: 1: curl: not found
ERROR:root:Error generating BEB population.
Error generating BEB population.
ERROR:root:FPP calculation failed for ..
Traceback (most recent call last):
File "/home/prometheus/miniconda3/envs/vespa/lib/python3.5/site-packages/VESPA-0.5.1-py3.5-linux-x86_64.egg/EGG-INFO/scripts/calcfpp", line 151, in <module>
n=args.n)
File "/home/prometheus/miniconda3/envs/vespa/lib/python3.5/site-packages/VESPA-0.5.1-py3.5-linux-x86_64.egg/vespa/fpp.py", line 288, in from_ini
savefile=popset_file, **kwargs)
File "/home/prometheus/miniconda3/envs/vespa/lib/python3.5/site-packages/VESPA-0.5.1-py3.5-linux-x86_64.egg/vespa/populations.py", line 2036, in __init__
do_only=do_only)
File "/home/prometheus/miniconda3/envs/vespa/lib/python3.5/site-packages/VESPA-0.5.1-py3.5-linux-x86_64.egg/vespa/populations.py", line 2151, in generate
mags=mags, MAfn=MAfn, n=n, **beb_kws)
File "/home/prometheus/miniconda3/envs/vespa/lib/python3.5/site-packages/VESPA-0.5.1-py3.5-linux-x86_64.egg/vespa/populations.py", line 1753, in __init__
maxrad=maxrad, f_binary=f_binary, **kwargs)
File "/home/prometheus/miniconda3/envs/vespa/lib/python3.5/site-packages/VESPA-0.5.1-py3.5-linux-x86_64.egg/vespa/populations.py", line 1782, in generate
maxrad=maxrad, **kwargs)
File "/home/prometheus/miniconda3/envs/vespa/lib/python3.5/site-packages/VESPA-0.5.1-py3.5-linux-x86_64.egg/vespa/stars/populations.py", line 2193, in __init__
get_trilegal(basefilename,ra,dec,**kwargs)
File "/home/prometheus/miniconda3/envs/vespa/lib/python3.5/site-packages/VESPA-0.5.1-py3.5-linux-x86_64.egg/vespa/stars/trilegal.py", line 92, in get_trilegal
AV = get_AV_infinity(l,b,frame='galactic')
File "/home/prometheus/miniconda3/envs/vespa/lib/python3.5/site-packages/VESPA-0.5.1-py3.5-linux-x86_64.egg/vespa/stars/extinction.py", line 45, in get_AV_infinity
with open(tmpfile, 'r') as f:
FileNotFoundError: [Errno 2] No such file or directory: '/tmp/nedsearch215.647582078959927.910368050815226.html'
FPP calculation failed for ..
Traceback (most recent call last):
File "/home/prometheus/miniconda3/envs/vespa/lib/python3.5/site-packages/VESPA-0.5.1-py3.5-linux-x86_64.egg/EGG-INFO/scripts/calcfpp", line 151, in <module>
n=args.n)
File "/home/prometheus/miniconda3/envs/vespa/lib/python3.5/site-packages/VESPA-0.5.1-py3.5-linux-x86_64.egg/vespa/fpp.py", line 288, in from_ini
savefile=popset_file, **kwargs)
File "/home/prometheus/miniconda3/envs/vespa/lib/python3.5/site-packages/VESPA-0.5.1-py3.5-linux-x86_64.egg/vespa/populations.py", line 2036, in __init__
do_only=do_only)
File "/home/prometheus/miniconda3/envs/vespa/lib/python3.5/site-packages/VESPA-0.5.1-py3.5-linux-x86_64.egg/vespa/populations.py", line 2151, in generate
mags=mags, MAfn=MAfn, n=n, **beb_kws)
File "/home/prometheus/miniconda3/envs/vespa/lib/python3.5/site-packages/VESPA-0.5.1-py3.5-linux-x86_64.egg/vespa/populations.py", line 1753, in __init__
maxrad=maxrad, f_binary=f_binary, **kwargs)
File "/home/prometheus/miniconda3/envs/vespa/lib/python3.5/site-packages/VESPA-0.5.1-py3.5-linux-x86_64.egg/vespa/populations.py", line 1782, in generate
maxrad=maxrad, **kwargs)
File "/home/prometheus/miniconda3/envs/vespa/lib/python3.5/site-packages/VESPA-0.5.1-py3.5-linux-x86_64.egg/vespa/stars/populations.py", line 2193, in __init__
get_trilegal(basefilename,ra,dec,**kwargs)
File "/home/prometheus/miniconda3/envs/vespa/lib/python3.5/site-packages/VESPA-0.5.1-py3.5-linux-x86_64.egg/vespa/stars/trilegal.py", line 92, in get_trilegal
AV = get_AV_infinity(l,b,frame='galactic')
File "/home/prometheus/miniconda3/envs/vespa/lib/python3.5/site-packages/VESPA-0.5.1-py3.5-linux-x86_64.egg/vespa/stars/extinction.py", line 45, in get_AV_infinity
with open(tmpfile, 'r') as f:
FileNotFoundError: [Errno 2] No such file or directory: '/tmp/nedsearch215.647582078959927.910368050815226.html'
$ conda list
# packages in environment at /home/prometheus/miniconda3/envs/vespa:
#
asn1crypto 0.24.0 <pip>
astropy 2.0.1 np113py35_0
astroquery 0.3.9.dev0 <pip>
batman-package 2.4.6 <pip>
beautifulsoup4 4.7.1 <pip>
blas 1.0 mkl
certifi 2016.2.28 py35_0
certifi 2019.3.9 <pip>
cffi 1.12.2 <pip>
chardet 3.0.4 <pip>
cryptography 2.6.1 <pip>
cycler 0.10.0 py35_0
cython 0.26 py35_0
dbus 1.10.20 0
emcee 2.2.1 <pip>
entrypoints 0.3 <pip>
expat 2.1.0 0
fontconfig 2.12.1 3
freetype 2.5.5 2
glib 2.50.2 1
gst-plugins-base 1.8.0 0
gstreamer 1.8.0 0
html5lib 1.0.1 <pip>
icu 54.1 0
idna 2.8 <pip>
isochrones 1.2.1 <pip>
jeepney 0.4 <pip>
jpeg 9b 0
keyring 19.0.1 <pip>
libffi 3.2.1 1
libgcc 5.2.0 0
libiconv 1.14 0
libpng 1.6.30 1
libxcb 1.12 1
libxml2 2.9.4 0
llvmlite 0.28.0 <pip>
matplotlib 2.0.2 np113py35_0
mkl 2017.0.3 0
mock 2.0.0 <pip>
numba 0.43.1 <pip>
numexpr 2.6.9 <pip>
numpy 1.13.1 py35_0
openssl 1.0.2l 0
pandas 0.20.3 py35_0
pandas 0.23.4 <pip>
pandas 0.24.2 <pip>
pbr 5.1.3 <pip>
pcre 8.39 1
pip 19.0.3 <pip>
pip 9.0.1 py35_1
plotutils 0.3.2 <pip>
py 1.4.34 py35_0
pycparser 2.19 <pip>
pyparsing 2.2.0 py35_0
pyqt 5.6.0 py35_2
pytest 3.2.1 py35_0
python 3.5.4 0
python-dateutil 2.6.1 py35_0
pytz 2017.2 py35_0
qt 5.6.2 5
readline 6.2 2
requests 2.21.0 <pip>
scipy 1.2.0rc2 <pip>
SecretStorage 3.1.1 <pip>
setuptools 36.4.0 py35_1
simpledist 0.1.13 <pip>
sip 4.18 py35_0
six 1.10.0 py35_0
soupsieve 1.9 <pip>
sqlite 3.13.0 0
tables 3.5.1 <pip>
tk 8.5.18 0
urllib3 1.24.1 <pip>
VESPA 0.5.1 <pip>
webencodings 0.5.1 <pip>
wheel 0.29.0 py35_0
xz 5.2.3 0
zlib 1.2.11 0
I realized the solution is to install curl which is not readily installed in Ubuntu Linux.
After installing curl via apt-get, calcfpp worked fine.