sinto

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How to deal with the same barcodes when merging the bam files from multiple samples?

1

Hi Tim, Thanks for developing this tool! It's very handy. Just one question: If I want to merge the bam files from multiple samples after running ```sinto filterbarcodes```, how can...

zhanglab2008

Hi, please look at the following comment from a closed issue. Opening a new issue here since I haven't heard back from anyone (presumably because commenting on a closed issue...

rtyags

Fix the following error: ``` barcode_fastq barcodes.fastq.gz read1 read1.fastq.gz read2 None bases 16 prefix suffix whitelist None func Traceback (most recent call last): File "/usr/local/bin/sinto", line 10, in sys.exit(main()) File...

bgruening

filterbarcodes cell file format

1

@timoast The docs say that the input 'cells' file should be a 2 column file with the barcodes in the first column and the groups that the cells belong to...

cathalgking