Tim Holy
This addresses some potential inconsistencies in `tricg` and `trimr` in the case `ldiv=true`: - docs: fixes the statement about the relationship between `E`/`F` and `M`/`N` - docs: describes the residual-norm...
~This is a proof-of-concept that in a~ For problems `Ax=b`, this allows the vector space of `x` (`vn`) to be different from the vector space of `b` (`vm`); also for...
From the docs, it appears that both CGLS and LSQR solve the same problem: ``` minimize ‖b - Ax‖₂² + λ‖x‖₂² ``` However, using Krylov 0.10.2 (the released version, not...
From the standpoint of differential geometry, in a problem like `Ax = b`, `x` and `b` are fundamentally different objects: `x` is a vector but `A'*b` is a *co*vector. (Specifically,...
This is not sufficiently minimal to use as a test case, but I've seen cases where a poor starting guess can lead to early termination and a result that derails...
Recent and pending PRs fix nearly all the test failures in JuliaInterpreter; the few that are left seem a consequence of the binding partitioning/world age on globals. I also took...
https://github.com/JuliaDebug/JuliaInterpreter.jl/blob/22f186bf2fcca6ef6b5570770035011441cb3bba/test/interpret.jl#L416-L420 is broken on Julia 1.12 and can be fixed by changing the test to `@test @interpret(g_gf()) == 2`. As much sense as I think that change makes, I decided...
This is probably very naive, but when one is working with a structure that represents a fragment, should there be an option to number the residues with respect to the...
This substantially reduces the amount of memory used to store coordinates and parse files. While parsing a large mmCIF file, the ~~memory usage dropped by approximately 50%, and read time...
As pointed out in #65, mmCIF now annotates secondary structure in ways that don't fit into the current `Char` scheme. One way to expand it in a way that could...