Whippet.jl
Whippet.jl copied to clipboard
Full Isoforms
There has been a substantial interest in a Whippet feature to use all edges to produce full isoforms.
- [x] Alter annotation support to load all known edges.
- [ ] Build/filter isoforms for legitimate txStart and txEnds
- [ ] Predict or assign CDS start and end
- [ ] Re-calculate expression values for these full-length isoforms
- [ ] Assign known transcript ids to these isoforms if not found in annotation
Moved to Whippet v0.4