how does whippet define exon skip events?

[mhjiang97]

can Whippet detect exon skip events?

it seems that CE (core exon) doesn't contain exon skip.

Thank you!

[mhjiang97]

Dear Zheng,

Many thanks for the reply!

Best, Minghao

2020年12月27日 22:48，Zheng An [email protected] 写道：

can Whippet detect exon skip events?

it seems that CE (core exon) doesn't contain exon skip.

Thank you!

Hi,

I also noticed this and I found that if we need to calculate the number of exon skipping events, we need to check Inc_Paths and Exc_Paths in your psi file. For all CE node, we need to make sure that it occurs in Exc_Paths so we can identify this event as exon skipping event.

Best, Zheng

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[OlgaVT]

Hi, I am sorry - I do not see the reply but have the same question. Thank you!

[mhjiang97]

Hi, I am sorry - I do not see the reply but have the same question. Thank you!

Hi,

click the button ... at the end of my reply above, and you will find Zheng's advice~

Cheers, Minghao

[OlgaVT]

Oh, I see. Sorry. Thank you!