pATLAS

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the website is down

2

Hello everyone, I have recently discovered pAtlas but the website http://www.patlas.site/ seems to be down. Is it planned to be fixed or not maintained anymore? Thanks in advance!

ilkaybuysal

consensus import

1

After the creation of the consensus `JSON` file in pATLASflow, as described in [tiagofilipe12/pATLASflow#3](https://github.com/tiagofilipe12/pATLASflow/issues/3), a score can be created from the arithmetic mean of the values of each one of...

tiagofilipe12

Node colapse on given identity, size ratio, shared hashes

tiagofilipe12

One module that we may use is this: https://github.com/wenzhixin/bootstrap-table/tree/master/src/extensions/filter-control

tiagofilipe12

Ui control graph for vivagraph display may help to establish a better visualization. Therefore, add a `div` that allows to specify and change parameters for vivagraph `layout`.

tiagofilipe12

Add export image

2

Add an option to export current visualization (as pdf, png and jpg).

tiagofilipe12

All jsons that populate the drop downs can be improved to have less information given that the vast majority of those information are already stored in the psql database. However,...

tiagofilipe12

At the moment to highlight and filter (or not) the network users have to go through a series of modals that ask simple questions in each one of them, but...

tiagofilipe12

add virulence finder

1

Since we have vfdb in the future we could add [VirulenceFinder](https://cge.cbs.dtu.dk/services/data.php).

tiagofilipe12

Dark mode

1

Add a dark mode to visualization.

tiagofilipe12