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In case someone has the same problem... I got this error and noticed there were feature lines in my gff file that didn't have all 9 fields (it was actually...

Hi Simon, Thanks a lot for your answer! I was not aware of that. I ran it now with "--virome" and all four phages were grouped into cat 2. That's...

Hi Phil, thank you for the response! Regarding the empty "trees" directory, I saw that the following three lines are outcommented in script 4 (lines 153-155). ``` # tree_outfile =...

Alright, thank you Dave!