FindMyFriends
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thomasp85
Fast alignment-free pangenome creation and exploration
Hi, just to report that the following piece of code when gene location is passed as data.frame: ``` if (!all(unique(gL$strand)) %in% c(-1, 1)) { return('Strand must be coded with -1...
Hello Thomas, I have installed the GitHub version and have some issues with the cdhitGrouping function. This issue is present when I tried to run the function on my dataset,...
Hello @thomasp85 Thanks for releasing this package. Looking forward to using it for microbial pangenome analysis! I encountered the following warnings while installing the package from GitHub. Here's the gist...
Is it possible to export the core genome and the singletons from the individual genomes as protein fasta file?
I am writing an R package where I would like to call cdhit without requiring an external installation. I see that you ported most of cdhit to Rcpp and made...
Hi there, I sent out a tweet a few hours ago (https://twitter.com/thesciencedork/status/1012398574582353920) wondering if there was a way that your program could seamlessly work with files annotated with [Prokka](https://github.com/tseemann/prokka). I...
Hello Thomas, Our research group is working on couple comparative genomics paper and planning to use your software extensively but I am having problem with my protein files for couple...
I installed FindMyFriends using the `biocLite()` instructions and tried to run the usage example. However, the installed version seems to be missing the `cdhitGrouping()` function, only `gpc/graphGrouping()` are available. I...
