theo-llewellyn

Hi, this is error I get ``` Error: File format problem in trying to open HMM file /rds/general/ephemeral/user/tbl19/ephemeral/DRAM_data/database_files/kofam_profiles.tar.gz. Format tag is 'profiles/': unrecognized. Current H3 format is 'HMMER3/f'. Previous H2/H3...

I have the same problem using trees that have some branch lengths = 0. Is there a way around this?

Hey, thanks for the reply. When I call raise.dendrogram(dend, 0.01) on the dendrogram I get the following error: Error in attr(dend, "height")

library(ape) library(dendextend) ASTRAL_tree

structure(list(edge = structure(c(380L, 381L, 382L, 383L, 383L, 382L, 384L, 385L, 385L, 384L, 386L, 386L, 381L, 387L, 388L, 388L, 387L, 389L, 390L, 390L, 389L, 391L, 391L, 392L, 392L, 380L, 393L, 394L,...

Sorry for the massively long message! Haha. On inspecting the dendrograms produced by as.dendrogram I think something may going on at this stage as they have 0 members. Is it...

Hi dezordi, Ah that makes sense, I had to collapse poorly supported branches in my gene trees before producing my ASTRAL tree so that will have lead to unresolved in...

great thanks for your help!

If its any help the following allowed me to save to pdf with annotations when I had the same problem: 1. open the tree in figtree and show annotations 2....