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How to reproduce paper results
Hi,I am reproducing the results of your article, but I have encountered some environmental problems.
As described in https://github.com/theislab/scgen-reproducibility, I recreated a virtual environment called scgen-reproduce with packages tensorflow, scanpy, numpy, matplotlib, scipy, and wget. Then follow the prompts to cd to the code path and run the following command line: python ModelTrainer.py all [all datas have been downloaded ] , but an error is encountered:
_Traceback (most recent call last):
File "
- Directory name: name of directory “/public/home/nierq01/platform/scGen/reproduce/scgen-reproducibility-master/code” does not contain a valid version.
- VCS: could not find VCS from directory “/public/home/nierq01/platform/scGen/reproduce/scgen-reproducibility-master/code”.
- Package metadata: could not find distribution “scgen”._
What I understand is that when reproducing the results, you don't have to install scgen yourself in the python environment, right?