scCODA
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Allow set random seed for reproducibility in `CompositionalAnalysis` objects
Usage
In sccoda.util.comp_ana.CompositionalAnalysis
, add seed
optional parameter:
- If not specifying a value, it behaves as normal.
- If specifying a value as the following:
from sccoda.util import comp_ana as mod
...
model_salm = mod.CompositionalAnalysis(data_salm, formula="Condition", reference_cell_type="Goblet", seed=0)
This code reproduces the same result in different execution times.
Hi, thanks for this pull request! I am unsure though, whether this change is necessary. As far as I know, it is also possible to get consistent results by running
tf.random.set_seed(0)
model_salm = mod.CompositionalAnalysis(data_salm, formula="Condition", reference_cell_type="Goblet")
Are you aware of any situations where this strategy could fail to produce reproducible results?