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gdsc and prism annotation warnings
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tests/metadata/test_cell_line.py::test_gdsc_annotation
/home/zeth/miniconda3/envs/pertpy/lib/python3.13/site-packages/anndata/_core/anndata.py:740: UserWarning:
AnnData expects .obs.index to contain strings, but got values like:
[14, 47, 1124, 952, 14]
Inferred to be: integer
value_idx = self._prep_dim_index(value.index, attr)
tests/metadata/test_cell_line.py::test_prism_annotation
/home/zeth/PycharmProjects/pertpy/pertpy/metadata/_cell_line.py:198: DtypeWarning: Columns (14,15) have mixed types. Specify dtype option on import or set low_memory=False.
df = pd.read_csv(drug_response_prism_file_path, index_col=0)[["depmap_id", "name", "ic50", "ec50", "auc"]]
tests/metadata/test_cell_line.py::test_prism_annotation
/home/zeth/miniconda3/envs/pertpy/lib/python3.13/site-packages/anndata/_core/anndata.py:740: UserWarning:
AnnData expects .obs.index to contain strings, but got values like:
[875, 485, 485, 7, 875]
Inferred to be: integer
value_idx = self._prep_dim_index(value.index, attr)
let's try to resolve these.
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